Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 454 a.a., signal recognition particle protein from Magnetospirillum magneticum AMB-1

 Score =  267 bits (682), Expect = 6e-76
 Identities = 168/452 (37%), Positives = 257/452 (56%), Gaps = 29/452 (6%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   L     KL     + +  V + +++++ AL+++DV + +V      ++ +A+
Sbjct: 1   MFESLSSRLGKVFEKLTGRGALSEADVTDALREVRVALLEADVALSVVKEFIGRVKARAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K +S  + +VKIV+DEL+  LG    +L L      VIL++G+QGSGKTT++AK+
Sbjct: 61  GAEVIKSVSPGQMVVKIVHDELIATLGTKGTELNLSAVPPVVILMVGLQGSGKTTTSAKI 120

Query: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINV---PLFGDETRTKTPVEITKEGME 177
           A  ++K+  +  L + DVYRPAA QQL+ L+ +  V   P+   E     PV I+K  ++
Sbjct: 121 ALKLKKEKKKVLLASLDVYRPAAQQQLQILAGQAEVGSLPIVMGE----MPVAISKRALD 176

Query: 178 KLKK--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFK 235
             +K   DV+I+DTAGR   ++ L+AE+  ++D   P E +LV D  +GQ A   A+ F 
Sbjct: 177 VGRKEGYDVVILDTAGRLHIDQELMAEVAAVRDAAKPTETLLVTDAMVGQDAVTLAREFN 236

Query: 236 ESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILG 295
           E V   G I++T++DG A+GG ALS  A    PIKF+G GE +D LE F P +   RILG
Sbjct: 237 EKVGVTG-IVLTRIDGDARGGAALSMRAITGRPIKFLGAGEKLDALEVFHPDRIAGRILG 295

Query: 296 LGDLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGM 354
           +GD+  L+EK  + +D E  E     + KGKF L ++  Q   + KMG +K IL M+PG+
Sbjct: 296 MGDVVGLVEKAMETLDQEEAERLAKRMEKGKFDLDDMRKQFAQVRKMGDLKGILGMLPGI 355

Query: 355 GGNMPKEAAQLTEAKL-----KRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEE 409
           G    K A  L +A +      R + ++ SMT  E+ NP+LIK SR +RIA GAGV+ ++
Sbjct: 356 G----KMAGALKDANIDNKMVARQEAIITSMTKAERRNPDLIKASRKKRIAAGAGVEVQD 411

Query: 410 IKDLLKYYSTTKNAFGNLKRGKMPKMGGQMGQ 441
           +  LLK Y          +   M K  G++GQ
Sbjct: 412 VNKLLKQYQ---------QMADMMKKVGKLGQ 434