Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 453 a.a., Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) (NCBI) from Escherichia coli BW25113

 Score =  286 bits (732), Expect = 9e-82
 Identities = 166/448 (37%), Positives = 262/448 (58%), Gaps = 7/448 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   LS  L  +     + +  VK+ +++++ AL+++DV + +V      ++ KA+
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K L+  +  VKIV +ELV  +GE  Q L L     +V+L+ G+QG+GKTTS  KL
Sbjct: 61  GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
            +++++K  +  L ++ADVYRPAA +QL+ L+E++ V  F  +   K PV+I    ++  
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQK-PVDIVNAALKEA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK  DV+++DTAGR   +E ++ E+K++    NP E + V+D   GQ A N AKAF E+
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS       PIKF+G GE  + LE F P +  SRILG+G
Sbjct: 240 LPLTG-VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E  E  +D +  E + S LK    F L +   QL  +  MG M  ++  +PGMG
Sbjct: 299 DVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMG 358

Query: 356 GNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
                  +Q+ +  L R + +++SMTM+E+  PE+IK SR +RIA G G++ +++  LLK
Sbjct: 359 QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKMGGQMGQIM 443
            +   +     +K+G M KM   M  +M
Sbjct: 419 QFDDMQRMMKKMKKGGMAKMMRSMKGMM 446