Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 484 a.a., signal recognition particle-docking protein FtsY from Erwinia tracheiphila SCR3

 Score =  145 bits (367), Expect = 2e-39
 Identities = 100/304 (32%), Positives = 158/304 (51%), Gaps = 16/304 (5%)

Query: 2   LDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAID 61
           L K  QNL      L    F  KK+  ++ +++++ L+ +DV V+     ++ I      
Sbjct: 189 LVKTRQNLGSGFIGL----FRGKKIDDDLFEELEEQLLIADVGVET----TRRIITSLTQ 240

Query: 62  EAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLA 121
           +A  K L   E +  ++  E+ ++L +    L++      VIL++G+ G GKTT+  KLA
Sbjct: 241 QANRKQLRDAEALYGLLKQEMSEILAKVEFPLDVAGETPFVILMVGVNGVGKTTTIGKLA 300

Query: 122 RYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDET-RTKTPVEITKEGMEKLK 180
           R  Q +G    L A D +R AA +QL+   ++ ++P+    T      V        K +
Sbjct: 301 RQYQAEGKSVMLAAGDTFRAAAVEQLQVWGQRNDIPVVAQHTGADSASVIFDAIQAAKAR 360

Query: 181 KVDVIIIDTAGRHKEEEGLLAEMKE----MKDLTN--PNEIILVIDGTLGQQAKNQAKAF 234
            VDV+I DTAGR + +  L+ E+K+    MK L    P+E++L ID + GQ A +Q K F
Sbjct: 361 HVDVLIADTAGRLQNKSHLMEELKKITRVMKKLDEQAPHEVMLTIDASTGQNAISQTKLF 420

Query: 235 KESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRIL 294
            E+V   G I +TKLDG+AKGG   S   +   PI++IG GEG+++L  F    FI  + 
Sbjct: 421 HEAVGLTG-ITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGEGIEDLRSFKADDFIEALF 479

Query: 295 GLGD 298
              D
Sbjct: 480 ARED 483