Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 453 a.a., signal recognition particle protein from Erwinia tracheiphila SCR3

 Score =  282 bits (722), Expect = 1e-80
 Identities = 161/440 (36%), Positives = 262/440 (59%), Gaps = 7/440 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   LS  L  +     + +  +K+ +++++ AL+++DV + +V      ++ +A+
Sbjct: 1   MFDNLTDRLSQTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVREFINRVKERAL 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
            +   K L+  +  +KIV +ELV  +G     L L     +VIL+ G+QG+GKTTS  KL
Sbjct: 61  GQDVNKSLTPGQEFIKIVQNELVAAMGAENNTLNLAAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
            +++++K  +  L ++ADVYRPAA +QL++L+E++ V  F     ++ PV I K  ++  
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLEKLAEQVGVD-FCPSDLSQQPVYIVKNALQQA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK  DV+++DTAGR   +E ++ E+K++  + NP E + V+D   GQ A N AKAF E+
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAVINPVETLFVVDAMTGQDAANTAKAFNEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS     + PIKF+G GE  D LE F P +  SRILG+G
Sbjct: 240 LPLTG-VILTKVDGDARGGAALSIRHITDRPIKFMGVGEKTDALEPFYPDRIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E  E  +D    E + S LK    F L +   QL+ +  MG M  ++  +PGMG
Sbjct: 299 DVLSLIEDIESKVDRVQAEKLASKLKKGDGFDLNDFLQQLKQMRNMGGMASLMGKLPGMG 358

Query: 356 GNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
                  +Q+ +  L R + M++SMT +E+E PE+IK SR +R+A G+G++ +++  LLK
Sbjct: 359 QLPDNVKSQMDDKVLVRMEAMINSMTRKEREKPEIIKGSRKRRVATGSGMQVQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKM 435
            +   +     +K+G M KM
Sbjct: 419 QFDDMQRMMKKMKKGGMAKM 438