Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 453 a.a., signal recognition particle protein from Escherichia coli ECRC62

 Score =  286 bits (732), Expect = 9e-82
 Identities = 166/448 (37%), Positives = 262/448 (58%), Gaps = 7/448 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M D L   LS  L  +     + +  VK+ +++++ AL+++DV + +V      ++ KA+
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K L+  +  VKIV +ELV  +GE  Q L L     +V+L+ G+QG+GKTTS  KL
Sbjct: 61  GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177
            +++++K  +  L ++ADVYRPAA +QL+ L+E++ V  F  +   K PV+I    ++  
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQK-PVDIVNAALKEA 179

Query: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KLK  DV+++DTAGR   +E ++ E+K++    NP E + V+D   GQ A N AKAF E+
Sbjct: 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK+DG A+GG ALS       PIKF+G GE  + LE F P +  SRILG+G
Sbjct: 240 LPLTG-VVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESIDSILK--GKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E  E  +D +  E + S LK    F L +   QL  +  MG M  ++  +PGMG
Sbjct: 299 DVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMG 358

Query: 356 GNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
                  +Q+ +  L R + +++SMTM+E+  PE+IK SR +RIA G G++ +++  LLK
Sbjct: 359 QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKMGGQMGQIM 443
            +   +     +K+G M KM   M  +M
Sbjct: 419 QFDDMQRMMKKMKKGGMAKMMRSMKGMM 446