Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 479 a.a., p48 from Alteromonas macleodii MIT1002

 Score =  280 bits (716), Expect = 7e-80
 Identities = 161/448 (35%), Positives = 264/448 (58%), Gaps = 7/448 (1%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L + L   L  +     + +  +KE +++++ AL+++DV + +V     +++ +A+
Sbjct: 1   MFENLSERLGQTLRNVSGKGRLTEDNIKETLREVRMALLEADVALPVVKAFVAQVKERAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
                K L   +  +KIV  EL  ++GE  +KL L     +V+L+ G+QG+GKTTS  KL
Sbjct: 61  GTEVTKSLKPGQVFIKIVQSELESVMGEANEKLNLATQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 ARYI-QKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKL 179
           A+Y+ +++  +  +++ADVYRPAA +QL+ L+ ++NV  F   T  + P++I  + + + 
Sbjct: 121 AKYLTEREKKKVMVVSADVYRPAAIKQLETLAGEVNV-AFHPSTILQKPIDIVNDAIVEA 179

Query: 180 KK--VDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237
           KK   DV+++DTAGR   +  ++ E+KE+     P E + V+D   GQ A N AKAF ++
Sbjct: 180 KKNFFDVLLVDTAGRLHVDNDMMDEIKELHAAVKPIETLFVVDAMTGQDAANTAKAFNDA 239

Query: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
           +   G +++TK DG A+GG ALS       PIKFIG GE VD LE F P++  SRILG+G
Sbjct: 240 LPLTG-VILTKADGDARGGAALSVRHITGKPIKFIGMGEKVDALEPFHPERIASRILGMG 298

Query: 298 DLDSLLEKTEDIMDESTEESI-DSILKGK-FTLIELYAQLETISKMGPMKQILSMIPGMG 355
           D+ SL+E+ E  +D+S  E +   + KGK F L +   QLE +  MG M  +L  +PGMG
Sbjct: 299 DVLSLIEEVERKVDKSKAEKLAKKVQKGKGFDLQDFKDQLEQMKNMGGMMGMLDKLPGMG 358

Query: 356 GNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKDLLK 415
           G   K   Q  + +  + + +++SMT  E+  P++IK SR +RIA G+G + +++  LLK
Sbjct: 359 GMSDKIKDQANDKQFNQMEAIINSMTPAERARPDMIKGSRKRRIAAGSGTQIQDVNRLLK 418

Query: 416 YYSTTKNAFGNLKRGKMPKMGGQMGQIM 443
            ++  +     +  G M KM  QM  +M
Sbjct: 419 QFTQMQKMMKKMSGGGMKKMMRQMKGMM 446