Pairwise Alignments

Query, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

Subject, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

 Score =  265 bits (678), Expect = 2e-75
 Identities = 167/456 (36%), Positives = 262/456 (57%), Gaps = 22/456 (4%)

Query: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
           M + L   L   LN L     + +  V   ++++++AL+++DV +++V + +  +  KA+
Sbjct: 1   MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAV 60

Query: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
             A  K +   + +VKIV+DELV++LG     ++L  +   VI+++G+QGSGKTT+  K+
Sbjct: 61  GAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKI 120

Query: 121 ARYIQKKGLRPGLIAA-DVYRPAAYQQLKQLSEKINV---PLFGDETRTKTPVEITKEGM 176
           A+ +  +  +  L+A+ D  RPAA +QL+QL  +  V   P+   +    +P +I    +
Sbjct: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQ----SPTDIAARAV 176

Query: 177 E--KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAF 234
           +  KL   DV+I+DTAGR   +E L+ EM ++K  +NP+EI+LV D   GQ A N A+ F
Sbjct: 177 QAAKLGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNF 236

Query: 235 KESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRIL 294
            E V   G +L T++DG  +GG ALS  A    PIK IG GE ++ L++F P++   RIL
Sbjct: 237 DERVGITGLVL-TRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRIL 295

Query: 295 GLGDLDSLLEK-TEDIMDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPG 353
           G+GD+ SL+EK  E+I  E      + + KGKF L +L  QL  + KMG M  I+ ++PG
Sbjct: 296 GMGDIVSLVEKAAENIDAEKARSMAEKMAKGKFDLNDLADQLGQMKKMGGMGGIMGLMPG 355

Query: 354 MGGNMPKEA-AQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKD 412
           M G   K A A + +    R   ++ SMT  E+ NP+++K SR +RIA G+G    EI  
Sbjct: 356 MAGMKDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINK 415

Query: 413 LLKYYSTTKNAFGNLKRGKMPKMGGQ-MGQIMRQLM 447
           LLK +    +         M  MGG+  G IM+Q+M
Sbjct: 416 LLKMHRGMAD--------MMKAMGGKGKGGIMKQMM 443