Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

 Score = 94.0 bits (232), Expect = 9e-24
 Identities = 107/421 (25%), Positives = 186/421 (44%), Gaps = 63/421 (14%)

Query: 17  LASLLLIAFKGISFG---VDLSGGS--TIVLQ-TESELSESEMTTVN---EILTSRLNTN 67
           LA+ +  A  G S G   + +S GS  T+ LQ T++ L+    + V+   EI+  R++  
Sbjct: 119 LAAPVTNALFGNSSGEMDLTVSSGSDGTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQL 178

Query: 68  GLSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFTAVIDNQT-------------- 113
           G  +  I  +G D I++++P   D +R++ +L Q    +  + +Q+              
Sbjct: 179 GTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPE 238

Query: 114 --AYTGQDVS-YVEEPGMTASGYG----------------VGFKLTLDGAQKFADVAYGK 154
                GQD   Y+ E  +  SG                  V F+   +GA++FA V+   
Sbjct: 239 SEVLKGQDGQPYLVEKQVRVSGEDLVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQES 298

Query: 155 GGYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGS 214
            G P  + +D + ISAP++   +  G          AG       + +A  +   L++G+
Sbjct: 299 VGRPFAIVLDNQVISAPVIREPILGG----------AGQISGSFTVQQANDLAILLRAGA 348

Query: 215 LPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIV-LPILITGFS 273
           LP  + +    +V P+LG++ I+    A   A++A   V  F      +  L  LI    
Sbjct: 349 LPAPLKVVEERTVGPSLGADSIQAGKTA---AYVAGGLVTVFMLAVYGLFGLFALIALAV 405

Query: 274 EVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSI 327
            ++L+    S++   L L  IAG++  +G  VD  +VI     DE   G +    + K  
Sbjct: 406 HIILMFSLQSVLGATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGF 465

Query: 328 KRAFFIIFGAAATTIAAMLPLFVM-GIGMLKGFAITTIAGVLMGISISRPAFSRIIQYVL 386
             A   I  A  T++A  + LF+M G G ++GFA+T I G+L  +  +      +I Y +
Sbjct: 466 VNALGTILDANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWV 525

Query: 387 K 387
           K
Sbjct: 526 K 526



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 23 IAFKGISFGVDLSGGSTIVLQTESELSESEMT 54
          +A   ++ G+DL GGS I+L+ +      E T
Sbjct: 40 LASSRVTLGLDLQGGSHILLEVDGPALRRERT 71