Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 86/398 (21%), Positives = 165/398 (41%), Gaps = 75/398 (18%)

Query: 33  DLSGGSTIVL-QTESELSESEMTTVNEILTS---RLNTNGLSDVRIYPRGSDEIVIEIPE 88
           DL+G + + L  + ++++E    ++ + LT+   R+N  G+++  +  +G++ IV+E+P 
Sbjct: 208 DLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPG 267

Query: 89  SADLERIQKILTQQGVFT--------------------------AVIDNQTAYTGQDVSY 122
             D    ++IL +                               A+I+     TG  V+ 
Sbjct: 268 VQDTAEAKRILGKTANLEFRLAAEPGATRATAEEFEFREGNRPPALIERGLIITGDQVTD 327

Query: 123 VE---------EPGMTASGYG-----------VGFKLTLDGAQKFADVAYGKG------- 155
            +         E  +   G+G           VG  + +   ++     Y K        
Sbjct: 328 AKAGFGEHGTPEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPITTYTKQMVNGVEK 387

Query: 156 GYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSL 215
             PV+ + +EK I +      LA           + G N   E  + A +    L++G L
Sbjct: 388 DVPVQTFKEEKKIIS------LATIQSPLGAQFRITGLNGQGESSELALL----LRAGGL 437

Query: 216 PVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEV 275
              ++     ++ P+LG++ I   V A ++  + V+  I   Y+   ++  + + G   +
Sbjct: 438 AAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIYRFFGVIATVALAG--NM 495

Query: 276 LLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSIKR 329
           +++L   SL+   L L  IAGI+  +G  VD  ++I     +E  +G    + + +   R
Sbjct: 496 VMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGR 555

Query: 330 AFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGV 367
           AF  I  +  TT+     LF MG G +KGFA+T   G+
Sbjct: 556 AFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGI 593