Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 626 a.a., Protein translocase subunit SecD from Variovorax sp. SCN45

 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 81/367 (22%), Positives = 157/367 (42%), Gaps = 61/367 (16%)

Query: 60  LTSRLNTNGLSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFT------------- 106
           L +R+N  G+++  I  +G D IV+++P   D  + ++IL +                  
Sbjct: 241 LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKEILGRTATLEMRMVDESAEGRAA 300

Query: 107 ---------------------AVIDNQTAYTGQDVSYVEEPGMTASGYGVGFKLTLD--G 143
                                 ++  Q   TG++++  + PG           LT+D  G
Sbjct: 301 ELGGGPVPFGSEKFLDRQGRPVIVKKQVLVTGENLTDAQ-PGFDQQSNQPKVDLTMDAKG 359

Query: 144 AQKFADVAYGKGGYPVELYMDEKA----ISAPLLSADLADGNIHQNQVITVAGSNPTEED 199
            +   DV+       + + + EK     ++AP ++ +L  GN  Q     V+GS    E 
Sbjct: 360 GRIMRDVSRENYKKRMAMLIFEKGKGEVLTAPSINGEL--GNRFQ-----VSGSMTVVEA 412

Query: 200 IDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYK 259
            D A +    L++GSL   + I    ++ PTLG++ I+    + ++ F+A+   +   Y 
Sbjct: 413 NDLALL----LRAGSLAAPMEIIQERTIGPTLGADNIEKGFKSVMYGFLAIMVFMCAYYA 468

Query: 260 NPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVIT----DET 315
              +   I +     ++L++   S++   L L  IA +  A+G  +D  ++I     +E 
Sbjct: 469 LFGLFSSIALA--VNLMLLVAILSMLQATLTLPGIAAMALAIGVAIDSNVLINERVREEL 526

Query: 316 ISGEAKK--VTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGISI 373
            +G + +  +    +RA+  I  +  TT+ A + L   G G ++GFA+    G++  +  
Sbjct: 527 RNGASPQAAIHAGYERAWGTILDSNVTTLIAGIALLAFGSGPVRGFAVVHCIGIVTSM-F 585

Query: 374 SRPAFSR 380
           S   FSR
Sbjct: 586 SAVFFSR 592