Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 80/379 (21%), Positives = 166/379 (43%), Gaps = 61/379 (16%)

Query: 44  TESELSESEMTTVNEILTS---RLNTNGLSDVRIYPRGSDEIVIEIPESADLERIQKILT 100
           T+++++E    ++ + LT+   R+N  G+++  +  +G++ IV+E+P   D    ++IL 
Sbjct: 219 TQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILG 278

Query: 101 Q-------------------------QGVFTAVIDNQTAYTGQDVSYVEEPGMTASGYGV 135
           +                         +G  +A ++     TG  V+  +          V
Sbjct: 279 KTANLEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQV 338

Query: 136 GFKLTLDGAQKFADVAYGKGGYPVE-LYMDEKAISAPLLSA------DLA-DGNIHQNQV 187
             +L   G +  +       G  +  +++++K ++  +  A      D+A    + + ++
Sbjct: 339 NIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKI 398

Query: 188 ITVA-------------GSNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSE 234
           I++A             G N   E  + A +    L++G L   ++     ++ P+LG++
Sbjct: 399 ISLATIQSPLGSQFRITGLNGQGESSELALL----LRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 235 FIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASI 294
            I   + A ++  + V+  I   Y+   ++  I + G   ++L+L   SL+   L L  I
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAG--NMVLLLALMSLLGATLTLPGI 512

Query: 295 AGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSIKRAFFIIFGAAATTIAAMLPL 348
           AGI+  +G  VD  ++I     +E  +G +  + + +   RA+  I  A  TT+     L
Sbjct: 513 AGIVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGIL 572

Query: 349 FVMGIGMLKGFAITTIAGV 367
           F MG G +KGFA+T   G+
Sbjct: 573 FAMGTGPVKGFAVTMSLGI 591