Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 522 a.a., protein translocase subunit SecD from Magnetospirillum magneticum AMB-1

 Score = 98.2 bits (243), Expect = 5e-25
 Identities = 91/380 (23%), Positives = 163/380 (42%), Gaps = 57/380 (15%)

Query: 37  GSTIVLQTESELSESEMTTVN---EILTSRLNTNGLSDVRIYPRGSDEIVIEIPESADLE 93
           GS ++  +E  +   +   +    EI+  R++  G  +  I  +G D IV+++P   D +
Sbjct: 129 GSMVLKYSEQAVKARKTAAIEQSLEIVRRRIDELGTREPSIQRQGEDRIVVQLPGVKDPD 188

Query: 94  RIQKILTQQGVFTA-VIDNQTAYT---------------------GQDVSYVEEPGMTAS 131
           RI+ +L +    T  ++D+ T                        G   SYV    +   
Sbjct: 189 RIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYVVRKRIEVG 248

Query: 132 G---------YGVG-----FKLTLDGAQKFADVAYGKGGYPVELYMDEKAISAPLLSADL 177
           G         Y  G     F+ +  GA+KF D      G  + + +DEK ISAP ++  +
Sbjct: 249 GDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVISAPRINEPI 308

Query: 178 ADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIK 237
             G+        ++GS   ++  D    +   L++G+LP  + +    +V P LG++ I+
Sbjct: 309 LGGSG------IISGSFSVQQAQD----LSLLLRAGALPAPLQVLEERTVGPDLGADSIQ 358

Query: 238 GSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDWKLDLASIAGI 297
              +A +     V  ++   Y +   +  + +     ++L+L   S +   L L  IAGI
Sbjct: 359 AGAVASLLGLALVVVLMIIVYGSLGALADLAMV--LNLILLLASLSALGATLTLPGIAGI 416

Query: 298 IAAVGTGVDHQIVI----TDETISGEA--KKVTKSIKRAFFIIFGAAATTIAAMLPLFVM 351
           +  +G  VD  ++I     +E  +G +    +     RAF  IF A  TT+ A   LF  
Sbjct: 417 VLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQF 476

Query: 352 GIGMLKGFAITTIAGVLMGI 371
           G G ++GFA+T   G+L  +
Sbjct: 477 GSGPVRGFAVTLTLGLLASL 496



 Score = 28.1 bits (61), Expect = 6e-04
 Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 28  ISFGVDLSGGSTIVLQTESE-LSESEMTTVNEILTSRLNTNGLSDVRIYPRGSDEIVIEI 86
           +S G+DL GGS ++L+ ++  +   ++T++ E + + L    +    +  RG D++ + I
Sbjct: 43  VSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTLRKEKIKYSDLGARG-DQVSVRI 101

Query: 87  PESADLERIQKIL 99
            E+ +  + ++ L
Sbjct: 102 IEADERAKAREFL 114