Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 604 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 101/403 (25%), Positives = 171/403 (42%), Gaps = 68/403 (16%)

Query: 35  SGGSTIVLQTESELSESEMTTVNE---ILTSRLNTNGLSDVRIYPRGSDEIVIEIPESAD 91
           SG     + T++ LSE+    V +   IL +R+N  G+++  +  +G+D IV+E+P   D
Sbjct: 195 SGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQD 254

Query: 92  LERIQKIL--TQQGVFTAVIDN--QTAYTGQDVSYVEEPGMTASGYGVGF--KLTLDGA- 144
             R ++IL  T    F  V  N  Q A     V    E   T  G  V    ++ L G  
Sbjct: 255 TARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDH 314

Query: 145 ------------QKFADVAYGKGGYPVELYMDEKAISAPLLS-------ADLADGN---- 181
                       Q   +++    G  +     +  I  P+ +       +   D N    
Sbjct: 315 ITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAV 374

Query: 182 -IHQNQVITVAG--------------SNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISS 226
            + Q +VI +A               SNP     +EA  +   L++G+L   + I    +
Sbjct: 375 LVKQEEVINIANIQSRLGNSFRITGISNP-----NEARQLSLLLRAGALIAPIQIVEERT 429

Query: 227 VSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLID 286
           + PTLG + IK  + A +   +     + F YK   ++    +   + ++LI+G  SL+ 
Sbjct: 430 IGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALV--ANLVLIVGIMSLLP 487

Query: 287 WK-LDLASIAGIIAAVGTGVDHQIVITD----ETISGEA--KKVTKSIKRAFFIIFGAAA 339
              L +  IAGI+  +   VD  ++I +    E  +G    + + +    AF  IF A  
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANI 547

Query: 340 TTIAAMLPLFVMGIGMLKGFAITTIAGVLMGISISRPAFSRII 382
           TT+  ++ L+ +G G +KGFAITT      GI ++   F+ II
Sbjct: 548 TTLIKVIILYAVGTGAIKGFAITT------GIGVATSMFTAII 584