Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 323 a.a., protein export protein SecF (NCBI) from Escherichia coli BW25113

 Score = 61.2 bits (147), Expect = 4e-14
 Identities = 37/163 (22%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 221 IEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILG 280
           ++ I  V P++G++  +   +A + A +++   + FR++  ++   ++I    +V++ LG
Sbjct: 128 VKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEW-RLAAGVVIALAHDVIITLG 186

Query: 281 FASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISGEAKKVTK---------SIKRAF 331
             SL   ++DL  +A +++ +G  ++  IV++D  I    +K+ +         S+ +  
Sbjct: 187 ILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDR-IRENFRKIRRGTPYEIFNVSLTQTL 245

Query: 332 FIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGISIS 374
                 + TT+  +L L++ G  +L+GF++T + GV +G + S
Sbjct: 246 HRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASS 288



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 8/30 (26%), Positives = 22/30 (73%)

Query: 16 VLASLLLIAFKGISFGVDLSGGSTIVLQTE 45
          ++A+++++  +G ++G+D +GG+ I +  E
Sbjct: 34 LIAAIVIMGVRGFNWGLDFTGGTVIEITLE 63