Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 989 a.a., protein-export membrane protein, SecD/SecF family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 36/343 (10%)

Query: 52  EMTTVNEILTSRLNTNGLSDVR-IYPRGSDEIVIEIPESADLERIQKILTQQGVFTAVID 110
           +  T+N IL          D++ + PRG   +    P   D E + ++   +   T    
Sbjct: 327 DTVTINRILNRE-------DIKPLLPRGLTFMWSVKPREVDGEELLELHAME---TPRGT 376

Query: 111 NQTAYTGQDVSYVEEPGMTASGYGVGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISA 170
            Q    G  ++  ++    +S   V   +  DGA+K+  +     G  + + +D    +A
Sbjct: 377 EQAPLEGDVITDAKQVLDQSSNPAVSMSMNADGARKWRKMTAENIGRRIAVVLDNYVYTA 436

Query: 171 PLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSLPVKVHIEYISSVSPT 230
           P +  ++  G        T          I+EA  +   LKSG+LP   +I   + + PT
Sbjct: 437 PNILGEIPSGQSEITGNFT----------IEEAKDLANILKSGTLPAPTNIVEEAIIGPT 486

Query: 231 LGSEFIK---GSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLIDW 287
           LG E       S++AG+   I V  +I++  K   + +  L+     +  ILG  + +  
Sbjct: 487 LGKEAQAQGINSMVAGLV--IVVLFMIAYYAKGGFVAIAALVFN---IFFILGILAQLGT 541

Query: 288 KLDLASIAGIIAAVGTGVDHQIVITDETI------SGEAKKVTKSIKRAFFIIFGAAATT 341
            L L  IAGI+  +G  +D  ++I +         +G  + +T    +AF  I  +  TT
Sbjct: 542 ALTLPGIAGIVLTIGMSIDANVLIFERIKEELAAGAGLLQAITSGYNKAFSAILDSNVTT 601

Query: 342 IAAMLPLFVMGIGMLKGFAITTIAGVLMGISISRPAFSRIIQY 384
                 L+ +G G +KGFAI  + G+      S    +R+I Y
Sbjct: 602 FLTGAILYALGQGPVKGFAIVLMIGIASSF-FSAVFITRVIVY 643



 Score = 45.8 bits (107), Expect = 5e-09
 Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 36/271 (13%)

Query: 135 VGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAISAPLLSADLA-DGNIH-----QNQVI 188
           +G    +    KF     G   Y VE + +  A S      D A DG++       N VI
Sbjct: 689 IGLAFAVINGLKFGVDFTGGRSYIVE-FAEPVAASDLKTGLDKAFDGSVEAKTYGSNNVI 747

Query: 189 TVAGSNPTEEDIDEA-WVIYTALKSGSLPV---------------KVHIEYISSVSPTLG 232
            +  S    +D DEA   + T ++ G   V                  I   S V  T+ 
Sbjct: 748 KITTSYLINDDSDEANSEVATKVREGIADVTGFSFVDEVAQMGDSSFAITGSSKVGATVA 807

Query: 233 SEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGFASLID-----W 287
            +    S+ A  FA +A+   I  R++  +  L  +I    + L ++   ++       +
Sbjct: 808 DDIKNSSMEAMFFALVAIFLYILLRFRKWQYSLASIIALAHDTLFVVAAFAIASAFGATF 867

Query: 288 KLDLASIAGIIAAVGTGVDHQIVITDE-----TISGEAKKV---TKSIKRAFFIIFGAAA 339
           ++D   IA ++  +G  ++  +++ D      T  G +K V     +I +        + 
Sbjct: 868 EIDQVFIAAMLTVIGYSINDTVIVFDRIRENITNRGTSKLVKMFNDAINQTMARTLITSF 927

Query: 340 TTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370
           TT+  ++ L + G  +L+GF+     GVL+G
Sbjct: 928 TTLIVVIVLLIFGGEVLRGFSFALFVGVLVG 958



 Score = 28.9 bits (63), Expect = 7e-04
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 16  VLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTT 55
           ++  L      G+ FGVD +GG + +++    ++ S++ T
Sbjct: 687 IIIGLAFAVINGLKFGVDFTGGRSYIVEFAEPVAASDLKT 726