Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 313 a.a., preprotein translocase subunit SecF from Alteromonas macleodii MIT1002

 Score = 54.7 bits (130), Expect = 4e-12
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 11/162 (6%)

Query: 218 KVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLL 277
           +V +  I  V P +G E  +   +A + A + +   ++ R++  +  L  +     +V+L
Sbjct: 116 EVDMRRIEFVGPNVGEELTEQGGLAMLVALLCILVYVAMRFEW-RFALGSVSALAHDVIL 174

Query: 278 ILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISGEAKKVTK---------SIK 328
            LG  S++  + DL  +A ++A +G  ++  IV+ D  I    +K+ K         S+ 
Sbjct: 175 TLGLFSVLQIEFDLTVLAAVLAVIGYSLNDTIVVCDR-IRENFRKIRKGEPVEIINISLT 233

Query: 329 RAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370
           +        + TT+  ++ LF  G  ++ GFA   + GV++G
Sbjct: 234 QTLNRTIITSLTTVLVLVALFYKGGALIHGFATALLFGVVVG 275



 Score = 26.9 bits (58), Expect = 8e-04
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 9   VVILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNG 68
           +V+  V +L S + +    +++G+D +GG+ I +  E   +        E + ++LN   
Sbjct: 20  MVLSTVLILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDAAN-------LEGIRAQLNEAN 72

Query: 69  LSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFTAVIDNQT-AYTGQDVSYVEEPG 127
             D  +   GS + V           + +I  + GV    I  Q  A    D + V+   
Sbjct: 73  FEDAIVQNFGSSQDV-----------LIRIAPRDGVKAVTIGEQVLAALRADGTEVDMRR 121

Query: 128 MTASGYGVGFKLTLDG 143
           +   G  VG +LT  G
Sbjct: 122 IEFVGPNVGEELTEQG 137