Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 857 a.a., protein-export membrane protein SECD from Agrobacterium fabrum C58

 Score =  100 bits (248), Expect = 2e-25
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 53/352 (15%)

Query: 58  EILTSRLNTNGLSDVRIYPRGSDEIVIEIPESADLERIQKILTQQGVFT-AVID------ 110
           E++  R++  G ++  I  +GSD I++++P   D +R++ +L Q    +  ++D      
Sbjct: 168 EVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQ 227

Query: 111 ----------NQTAYTGQD--VSYVEEPGMTASGYG----------------VGFKLTLD 142
                     ++  Y+  D  V Y+ E     SG                  V F+    
Sbjct: 228 DAMNGRPPATSEVLYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSR 287

Query: 143 GAQKFADVAYGKGGYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDE 202
           GAQ+FA       G P  + +D + ISAP++   +  G+   +   +V G+N        
Sbjct: 288 GAQRFAQATQQNVGKPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGAND------- 340

Query: 203 AWVIYTALKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPK 262
              +   L++G+LP  + +    +V P+LG++ I   + A     + V   +   Y    
Sbjct: 341 ---LAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFG 397

Query: 263 IVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVI----TDETISG 318
           ++  I +     V++++   S+I   L L  IAGI+  +G  VD  ++I     +E  SG
Sbjct: 398 LLANIAL--IVNVVMLIAVLSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSG 455

Query: 319 EA--KKVTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVL 368
           +   + +     RAF  I  A  TT+     LF MG G +KGFA+T   G++
Sbjct: 456 KPLIQALDNGFTRAFATIIDANLTTLIVASVLFYMGTGPVKGFAVTLAVGII 507



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 210 LKSGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILI 269
           L  G L  K     +  V P +  +    S I  + A  A+   I  R++  +  L  +I
Sbjct: 645 LVRGELEDKYDFRRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEW-QFALGAVI 703

Query: 270 TGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISG--EAKK----- 322
           +   +V+  +G    +  + +L SIA I+  +G  ++  +VI D         KK     
Sbjct: 704 SMVHDVVFTIGLFVFLGIEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSM 763

Query: 323 -VTKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMGI 371
            +  S+ +          T + A+L L++ G  +++ F    + GV +G+
Sbjct: 764 IIDVSLNQTLSRTILTGLTVLLALLALYLFGGEVIRSFTFAMLFGVGIGV 813



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 10  VILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGL 69
           VI+L CV   +     KG++ G+D  GGS  V++  ++  E+++  + E    RLN   L
Sbjct: 562 VIMLACVGGFVA----KGLNLGIDFQGGS--VIEVRAKQGEADLADIRE----RLNQLNL 611

Query: 70  SDVRIYPRGSDEIVI 84
            +++    GS + V+
Sbjct: 612 GEIQAQNFGSPQDVL 626



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 28  ISFGVDLSGGSTIVLQTE-SELSESEMTTVNEILTSRLNTNGLSDVRIYPRGSDEIVIEI 86
           ++ G+DL GGS I+L+ E S++ +  + T+   + ++L    +    +   G  +I + I
Sbjct: 45  VTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNG-QQIQVRI 103

Query: 87  PESADLERIQKIL 99
            + A +E  +  L
Sbjct: 104 SDPAQMEAAKTAL 116