Pairwise Alignments

Query, 255 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 285 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  136 bits (342), Expect = 5e-37
 Identities = 73/256 (28%), Positives = 141/256 (55%), Gaps = 10/256 (3%)

Query: 6   GFNLLFLVISLFLLLFVLLPLLNMILNPGNVAGA-----FNDSEVIKSLLVSIKAAGTAT 60
           GF L F     +L L +L+PL  ++ +   +  A       DS  + +L VS   A  A 
Sbjct: 20  GFGLTFGYTVTYLFLIILIPLGGLVWSTAKLGFADFIAIATDSRTLNALRVSFGTAFIAA 79

Query: 61  VLAIFLGIPLSYLLARYHFTGKNVVEAIIDIPMAIPHSVIGIMILAFFYGTS-IGRGIED 119
           ++    G+ ++++L RY F G+  V+AI+D+P A+P +V GI +   +     +G   E 
Sbjct: 80  LVNAVFGVIVAWVLTRYRFPGRRFVDAIVDLPFALPTAVAGIALTTLYANRGWVGSLFEP 139

Query: 120 IGFEIVDNFWGIVVVMLYVGLPYMVNSGRDGFLMVEEELENVSRTLGASKIKTFFNISLP 179
            G +I     GIV+ ++++GLP++V + +     ++ ++E V+ TLGA++ +T   + LP
Sbjct: 140 FGIKIAFTPTGIVIALIFIGLPFVVRTVQPVMEEIDRQVEEVAATLGANRFQTITRVLLP 199

Query: 180 LIKNNLVSGSILTFARGISEVGAILIVA----YFPKTTPVLILDRFNEYGLSSSKPISVI 235
            +   +++G  L FARG+ E G+++ +A    Y  +  P+LI+ R  E+  +++  I+ I
Sbjct: 200 SLTPAILTGFALAFARGVGEYGSVIFIAGNIPYVSEIAPLLIVIRLEEFNYAAATGIATI 259

Query: 236 MIVLSIILFSVFRLVR 251
           M+++S  +  +  L++
Sbjct: 260 MLIISFAMLFLINLIQ 275