Pairwise Alignments

Query, 138 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 205 a.a., hydrogenase 4 Fe-S subunit (VIMSS) from Escherichia coli BW25113

 Score = 72.0 bits (175), Expect = 5e-18
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 24/115 (20%)

Query: 10  CVDCKKCERACPINAIHVFDGI----------------PIRCMHCEDAPCLNVCPEDAIE 53
           C  C  C  AC  + +H   G+                P+ C HCE+APCL VCP +AI 
Sbjct: 12  CTGCNTCLAAC--SDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAPCLQVCPVNAIS 69

Query: 54  KIADKVVVHPEKCVGCALCAEVCPVGAIQ------IDRGTKVAVKCDGCIERGSE 102
           +  D + ++   C+GC LCA VCP GAI       ++   +   + +G ++ G E
Sbjct: 70  QRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEE 124



 Score = 30.4 bits (67), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 59  VVVHPEKCVGCALCAEVC------------PVGAIQIDRGTKVAVKCDGCIERGSEVCLE 106
           VV  P  C GC  C   C            P  A+         V C  C E     CL+
Sbjct: 5   VVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITAPVVCHHCEEAP---CLQ 61

Query: 107 VCPTKALDYYENTIE 121
           VCP  A+   ++ I+
Sbjct: 62  VCPVNAISQRDDAIQ 76



 Score = 29.6 bits (65), Expect = 3e-05
 Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 24/111 (21%)

Query: 6   NIDLCVDCKKCERACPINAIHVFDGIPIRCMHCEDAPCLNVCPEDAIEKIADKVVVHPEK 65
           N  LC+ CK C   CP  AI      P+   H +         +D  E    +  +    
Sbjct: 78  NESLCIGCKLCAVVCPFGAISASGSRPVNA-HAQYVFQAEGSLKDGEENAPTQHAL---- 132

Query: 66  CVGCALCAEVCPVGAIQIDRGTK-VAVKCDGC--IERGSEVCLEVCPTKAL 113
                          ++ + G + VAVKCD C  +  G   C+  CP +AL
Sbjct: 133 ---------------LRWEPGVQTVAVKCDLCDFLPEG-PACVRACPNQAL 167