Pairwise Alignments

Query, 500 a.a., phenylalanine--tRNA ligase subunit alpha from Methanococcus maripaludis S2

Subject, 358 a.a., Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 3e-33
 Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 50/295 (16%)

Query: 220 DAKIPTEDIYPAKAHPMSKIIQEVNEVLISMGFKEVKSQIVQTEFWNFDTLFEPQDHPAR 279
           D  +P     P   HP+S+ ++ + E+  SMGF       V++++ +F +L  P +HPAR
Sbjct: 93  DVSLPGRRRIPGGLHPVSRTLERIEEIFSSMGFDVADGPEVESDWHSFTSLNNPPNHPAR 152

Query: 280 DMQDTFFVKYPNTGKVPKELLEKVKGIHECGTIDGEKISKGWCYKFDENVSKRTVLRTHT 339
            MQDTF+V       +P                          Y    + S   V   H 
Sbjct: 153 SMQDTFYVDINGDDGIP--------------------------YNLRPHTSPMQVRYAHQ 186

Query: 340 TVSSIKYLASLSESERENPH-------KVFCIDRVFRNETIDYKHLPEFYQCEGIVMAED 392
            +   KY A  + +  +          +V    R +R ++ D  H P F+QCEG+ + E+
Sbjct: 187 HIK--KYAAEFAAAAADTTGTLKAPEIRVIAPGRTYRVDS-DATHSPMFHQCEGLWLGEN 243

Query: 393 VNFDNLVGILKEFLRKLGFEK----VRIRPAYFPFTEPSLEAEVY-----MEGKGWLELL 443
           V+F +L  +  +F R   FE+    +R RP++FPFTEPS E ++      + G+ WLE+ 
Sbjct: 244 VSFKDLKVVFTDFCRTF-FERDDLVLRFRPSFFPFTEPSAEIDIQFASGPLAGR-WLEVS 301

Query: 444 GAGVFRPEVLEPFGI---KKPVLAWGIGLSRLAMLRFGLTDIRELHKNDMEWLKK 495
           G+G   P V+   G+   +    A+G+G  RL MLR+G+ D+R     D+ +L +
Sbjct: 302 GSGQVHPNVVRNMGLDPERYIGFAFGMGPDRLTMLRYGVNDLRLFFDGDLRFLSQ 356