Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 317 a.a., electron transport complex, RnfABCDGE type, B subunit from Bacteroides ovatus ATCC 8483

 Score = 67.8 bits (164), Expect = 3e-16
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 48  CIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDN 107
           C+ C  C   C  DAI         E+   KC  C  C K CP     ++E R + ++  
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKA---IIEIRPQGKKSR 198

Query: 108 VVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSIDINLNLCMGC 167
            VY    I   ++    V  +    SCI CG C + CP  AIT+E  N   I+ + C  C
Sbjct: 199 RVY----ISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLE-NNLAYIDPHKCKSC 253

Query: 168 TACEKVCPKSAI 179
             C +VCP++ I
Sbjct: 254 RKCVEVCPQNTI 265



 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 14/125 (11%)

Query: 134 CIKCGICERFCPTSAITVEKRNSI-DINLNLCMGCTACEKVCPKSAIKVENEMGEITAEN 192
           C+ CG C   C   AI +     + +++   C  C AC K CPK+ I++  + G+ +   
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQ-GKKSRRV 200

Query: 193 EIS-LNND-----------TCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGKCEKNC 240
            IS +N D           +CI C  C + CP  AI  E+ L  +D   C  C KC + C
Sbjct: 201 YISCVNKDKGAVARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVC 260

Query: 241 PVTAI 245
           P   I
Sbjct: 261 PQNTI 265



 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 26/122 (21%)

Query: 114 EIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSIDINLNL---------- 163
           + D  H        E+DE  C  CG C + CP + I +  +      + +          
Sbjct: 153 QFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAV 212

Query: 164 --------CMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGA 215
                   C+GC  C K CP  AI +EN +  I            C +C  C E+CP   
Sbjct: 213 ARKACTVSCIGCGKCVKTCPFEAITLENNLAYIDPHK--------CKSCRKCVEVCPQNT 264

Query: 216 IV 217
           I+
Sbjct: 265 II 266



 Score = 38.5 bits (88), Expect = 2e-07
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 201 CINCMVCSEICPVGAIVY--EDGLMKLDDKMCIFCGKCEKNCPVTAIAIK 248
           C+ C  C   C   AI    E GL ++D+  C  CG C K CP   I I+
Sbjct: 142 CLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIEIR 191



 Score = 36.6 bits (83), Expect = 6e-07
 Identities = 29/124 (23%), Positives = 39/124 (31%), Gaps = 43/124 (34%)

Query: 43  VESNKCIRCELCYEMCPVDAIK-EPSVKSPAEI----------------LPEKCVKCEIC 85
           V+  KC  C  C + CP   I+  P  K    +                    C+ C  C
Sbjct: 168 VDEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKC 227

Query: 86  AKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCP 145
            KTCP  AI +        E+N+ Y                  +D   C  C  C   CP
Sbjct: 228 VKTCPFEAITL--------ENNLAY------------------IDPHKCKSCRKCVEVCP 261

Query: 146 TSAI 149
            + I
Sbjct: 262 QNTI 265



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 35  VPVERNL-YVESNKCIRCELCYEMCPVDAI-------KEPSVKSPAEILP 76
           + +E NL Y++ +KC  C  C E+CP + I       ++P  ++PA   P
Sbjct: 236 ITLENNLAYIDPHKCKSCRKCVEVCPQNTIIELNFPPRKPKEEAPAAPKP 285