Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH:ubiquinone oxidoreductase, chain I from Escherichia coli BL21

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 121 KIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSID---------INLNLCMGCTACE 171
           +I L +    EE C+ C +C   CP   I+++K  + D         IN + C+ C  CE
Sbjct: 47  RIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCE 106

Query: 172 KVCPKSAIKV--ENEMGEITAENEISLNNDTCIN 203
           + CP +AI++  + EMGE   ++ +    D  I+
Sbjct: 107 EACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLIS 140



 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 199 DTCINCMVCSEICPVGAIVYE-----DG-----LMKLDDKMCIFCGKCEKNCPVTAIAI 247
           + C+ C +C+  CPVG I  +     DG       +++   CIFCG CE+ CP TAI +
Sbjct: 58  ERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQL 116



 Score = 47.0 bits (110), Expect = 3e-10
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 16/73 (21%)

Query: 77  EKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIK 136
           E+CV C +CA  CPVG I++   +A+ ++     E   I+ +               CI 
Sbjct: 58  ERCVACNLCAVACPVGCISL--QKAETKDGRWYPEFFRINFSR--------------CIF 101

Query: 137 CGICERFCPTSAI 149
           CG+CE  CPT+AI
Sbjct: 102 CGLCEEACPTTAI 114



 Score = 37.7 bits (86), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 47  KCIRCELCYEMCPVDAIK-EPSVKSPAEILPE-------KCVKCEICAKTCPVGAINVLE 98
           +C+ C LC   CPV  I  + +        PE       +C+ C +C + CP  AI +  
Sbjct: 59  RCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTP 118

Query: 99  G--RAKLEEDNVVYELKEI 115
                + +  ++VYE +++
Sbjct: 119 DFEMGEYKRQDLVYEKEDL 137



 Score = 35.8 bits (81), Expect = 6e-07
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 164 CMGCTACEKVCPKSAI---KVENEMGEITAENEISLNNDTCINCMVCSEICPVGAI 216
           C+ C  C   CP   I   K E + G    E    +N   CI C +C E CP  AI
Sbjct: 60  CVACNLCAVACPVGCISLQKAETKDGRWYPEF-FRINFSRCIFCGLCEEACPTTAI 114



 Score = 27.7 bits (60), Expect = 2e-04
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 43  VESNKCIRCELCYEMCPVDAIK 64
           +  ++CI C LC E CP  AI+
Sbjct: 94  INFSRCIFCGLCEEACPTTAIQ 115



 Score = 23.9 bits (50), Expect = 0.002
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 227 DKMCIFCGKCEKNCPVTAIAIKQ 249
           ++ C+ C  C   CPV  I++++
Sbjct: 57  EERCVACNLCAVACPVGCISLQK 79