Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH:ubiquinone oxidoreductase, chain I from Escherichia coli BL21

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 61  PDIDNKCVYCNTCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVC 120
           PD + +CV CN C   CPV  I + K   +        + R   +    N  +C+ C +C
Sbjct: 54  PDGEERCVACNLCAVACPVGCISLQKAETK--------DGRWYPEFFRINFSRCIFCGLC 105

Query: 121 TKNCPFEAISESDD 134
            + CP  AI  + D
Sbjct: 106 EEACPTTAIQLTPD 119



 Score = 45.4 bits (106), Expect = 5e-10
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 36  EICILCNRCLEVCPVTAISSN---------FPEVPDID-NKCVYCNTCVETCPVDAIKIT 85
           E C+ CN C   CPV  IS           +PE   I+ ++C++C  C E CP  AI++T
Sbjct: 58  ERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLT 117



 Score = 43.9 bits (102), Expect = 1e-09
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 112 KKCVMCLVCTKNCPFEAIS----ESDDT------ISFNMDKCVLCGHCEEICPAKAIKL 160
           ++CV C +C   CP   IS    E+ D          N  +C+ CG CEE CP  AI+L
Sbjct: 58  ERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQL 116



 Score = 30.4 bits (67), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 23  DSQYISNKIEINPEICILCNRCLEVCPVTAI 53
           D ++      IN   CI C  C E CP TAI
Sbjct: 84  DGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114



 Score = 24.3 bits (51), Expect = 0.001
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 141 DKCVLCGHCEEICPAKAIKLE 161
           ++CV C  C   CP   I L+
Sbjct: 58  ERCVACNLCAVACPVGCISLQ 78