Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score =  104 bits (260), Expect = 2e-27
 Identities = 77/253 (30%), Positives = 110/253 (43%), Gaps = 53/253 (20%)

Query: 27  KESFIPPERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCIN 86
           K+  +P ER      ++    KCI C  C E CP DAI     +   + +P      C+ 
Sbjct: 31  KDLIVPVERN-----LYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPE----KCVK 81

Query: 87  CGNCVESCPT---NVLEMGTLRKEAKELLWNVPKI------INLL---IDEEVCVSCGTC 134
           C  C ++CP    NVLE G  + E   +++ + +I      I L+   +DEE C+ CG C
Sbjct: 82  CEICAKTCPVGAINVLE-GRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGIC 140

Query: 135 ENACPVDAISHNNTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKF 194
           E  CP  AI+       +I++NLC+ C  C K CP     V     E++ + EI+ N   
Sbjct: 141 ERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITAENEISLN--- 197

Query: 195 DRERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCP-GSIDLE----RLKVTSCIKSG 249
                                     CI C  C ++CP G+I  E    +L    CI  G
Sbjct: 198 -----------------------NDTCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCG 234

Query: 250 KCLEVCPTTAIRI 262
           KC + CP TAI I
Sbjct: 235 KCEKNCPVTAIAI 247



 Score = 97.1 bits (240), Expect = 5e-25
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 23/235 (9%)

Query: 104 LRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNT-GLYEIDVNLCVSCK 162
           ++++ K+L+  VP   NL ++   C+ C  C   CPVDAI   +     EI    CV C+
Sbjct: 26  VKEKLKDLI--VPVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCE 83

Query: 163 NCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCI 222
            C K CPV    V     +L E      N+ ++ + +    ++   V  E+       CI
Sbjct: 84  ICAKTCPVGAINVLEGRAKLEE-----DNVVYELKEIDVTHRKIRLVKHELDE---ESCI 135

Query: 223 GCGNCVDVCPGS-IDLER-----LKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECY 276
            CG C   CP S I +E+     + +  C+    C +VCP +AI+  V  ++ + TAE  
Sbjct: 136 KCGICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIK--VENEMGEITAENE 193

Query: 277 I-VDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAI 330
           I ++ + CI C +C   C V   +    E  L  ++ + C+ CG C+  CPV AI
Sbjct: 194 ISLNNDTCINCMVCSEICPVGAIVY---EDGLMKLDDKMCIFCGKCEKNCPVTAI 245



 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 262 IGVPEKITKRTAECYIVDEE--------KCIGCRICYRSCNVPEAILISKETNLPYINPE 313
           +G+ EK  K   +  IV  E        KCI C +CY  C V +AI      +   I PE
Sbjct: 19  LGIDEKFVKEKLKDLIVPVERNLYVESNKCIRCELCYEMCPV-DAIKEPSVKSPAEILPE 77

Query: 314 YCVRCGLCQNACPVDAIDYL----KTETSEDLYSKRKI 347
            CV+C +C   CPV AI+ L    K E    +Y  ++I
Sbjct: 78  KCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEI 115



 Score = 37.4 bits (85), Expect = 5e-07
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 299 ILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLKTETSEDLYSKRKIRDE 350
           +++  E NL Y+    C+RC LC   CPVDAI     ++  ++  ++ ++ E
Sbjct: 33  LIVPVERNL-YVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCE 83



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 49  CISCSACKESCPSDAISME 67
           CI C  C+++CP  AI+++
Sbjct: 230 CIFCGKCEKNCPVTAIAIK 248