Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 300 a.a., formate dehydrogenase, beta subunit, Fe-S containing from Enterobacter asburiae PDN3

 Score = 53.9 bits (128), Expect = 6e-12
 Identities = 52/201 (25%), Positives = 71/201 (35%), Gaps = 83/201 (41%)

Query: 122 LIDEEVCVSCGTCENACPV-----DAISHNNTGLYEIDVNL------------------- 157
           LID   C+ C  C+ AC       D + HN  G+Y+   +L                   
Sbjct: 33  LIDVTTCIGCKACQVACSEWNDLRDEVGHN-VGVYDNPADLTAKSWTVMRFSEVEQNDKL 91

Query: 158 --------CVSCKN--CLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKS 207
                   C+ C +  CLKACP E AI+ Y+             + F  E+         
Sbjct: 92  EWLIRKDGCMHCADPGCLKACPSEGAIIQYAN----------GIVDFQSEQ--------- 132

Query: 208 DVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERL--------KVTSCI------KSGKCLE 253
                        CIGCG C+  CP   D+ RL        K T C+      +   C++
Sbjct: 133 -------------CIGCGYCIAGCP--FDVPRLNPEDNRVYKCTLCVDRVTVGQEPACVK 177

Query: 254 VCPTTAIRIGVPEKITKRTAE 274
            CPT AI  G  E +    AE
Sbjct: 178 TCPTGAIHFGSKEDMKTLAAE 198



 Score = 36.6 bits (83), Expect = 1e-06
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 21/126 (16%)

Query: 49  CISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEA 108
           CI C AC+ +C       +  +E    + V+D  + +   +        V+    + +  
Sbjct: 39  CIGCKACQVACSE---WNDLRDEVGHNVGVYDNPADLTAKS------WTVMRFSEVEQND 89

Query: 109 KELLWNVPKIINLLIDEEVCVSCGT--CENACPVD-AISHNNTGLYEIDVNLCVSCKNCL 165
           K L W        LI ++ C+ C    C  ACP + AI     G+ +     C+ C  C+
Sbjct: 90  K-LEW--------LIRKDGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCI 140

Query: 166 KACPVE 171
             CP +
Sbjct: 141 AGCPFD 146



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 14/97 (14%)

Query: 49  CISCS--ACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106
           C+ C+   C ++CPS+   +++          F +  CI CG C+  CP +V  +     
Sbjct: 100 CMHCADPGCLKACPSEGAIIQYANGIVD----FQSEQCIGCGYCIAGCPFDVPRLNPEDN 155

Query: 107 EAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAI 143
              +          L +D         C   CP  AI
Sbjct: 156 RVYK--------CTLCVDRVTVGQEPACVKTCPTGAI 184



 Score = 33.5 bits (75), Expect = 8e-06
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 47  EKCISCSACKESCPSDA--ISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGT 103
           E+CI C  C   CP D   ++ E N  +K  + V D  +      CV++CPT  +  G+
Sbjct: 131 EQCIGCGYCIAGCPFDVPRLNPEDNRVYKCTLCV-DRVTVGQEPACVKTCPTGAIHFGS 188



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 212 EIPRIVP-SLCIGCGNCVDVCPGSIDL--ERLKVTSCIKSGKCLEVCPTTAIRIGVPEKI 268
           E+ +++  + CIGC  C   C    DL  E         +   L     T +R    E+ 
Sbjct: 29  EVAKLIDVTTCIGCKACQVACSEWNDLRDEVGHNVGVYDNPADLTAKSWTVMRFSEVEQN 88

Query: 269 TKRTAECYIVDEEKCIGCRI--CYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACP 326
            K     +++ ++ C+ C    C ++C   E  +I     +     E C+ CG C   CP
Sbjct: 89  DKLE---WLIRKDGCMHCADPGCLKACP-SEGAIIQYANGIVDFQSEQCIGCGYCIAGCP 144

Query: 327 VD 328
            D
Sbjct: 145 FD 146