Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 180 a.a., NADH:ubiquinone oxidoreductase, chain I from Escherichia coli BL21

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 15/107 (14%)

Query: 4   SIWY--LYEFVRKKWFMRFTNAKSEKESFIPPERFRKIPVIFDLP---EKCISCSACKES 58
           SIW   L+ F +++     T    E+  ++PP R+R   V+   P   E+C++C+ C  +
Sbjct: 16  SIWMIGLHAFAKRE-----TRMYPEEPVYLPP-RYRGRIVLTRDPDGEERCVACNLCAVA 69

Query: 59  CPSDAISMEFNE----EFKKEMPVFDAGSCINCGNCVESCPTNVLEM 101
           CP   IS++  E     +  E    +   CI CG C E+CPT  +++
Sbjct: 70  CPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQL 116



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 280 EEKCIGCRICYRSCNVPEAILISKETNLPYINPEY-------CVRCGLCQNACPVDAIDY 332
           EE+C+ C +C  +C V    L   ET      PE+       C+ CGLC+ ACP  AI  
Sbjct: 57  EERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ- 115

Query: 333 LKTETSEDLYSKRKIRDEFESILHS 357
           L  +     Y ++ +  E E +L S
Sbjct: 116 LTPDFEMGEYKRQDLVYEKEDLLIS 140



 Score = 38.9 bits (89), Expect = 1e-07
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 125 EEVCVSCGTCENACPVDAISHNNT---------GLYEIDVNLCVSCKNCLKACPVENAIV 175
           EE CV+C  C  ACPV  IS               + I+ + C+ C  C +ACP   AI 
Sbjct: 57  EERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPT-TAIQ 115

Query: 176 TYSEPELSEKIEIAQNIKFDRERL 199
              + E+ E     Q++ +++E L
Sbjct: 116 LTPDFEMGEYKR--QDLVYEKEDL 137



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 15/57 (26%)

Query: 221 CIGCGNCVDVCP-GSIDLE--------------RLKVTSCIKSGKCLEVCPTTAIRI 262
           C+ C  C   CP G I L+              R+  + CI  G C E CPTTAI++
Sbjct: 60  CVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQL 116



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 21/49 (42%)

Query: 313 EYCVRCGLCQNACPVDAIDYLKTETSEDLYSKRKIRDEFESILHSDLEE 361
           E CV C LC  ACPV  I   K ET +  +     R  F   +   L E
Sbjct: 58  ERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCE 106



 Score = 29.3 bits (64), Expect = 9e-05
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 48  KCISCSACKESCPSDAISM--EFN-EEFKKEMPVFD 80
           +CI C  C+E+CP+ AI +  +F   E+K++  V++
Sbjct: 98  RCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYE 133



 Score = 26.6 bits (57), Expect = 6e-04
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 24/75 (32%)

Query: 158 CVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIV 217
           CV+C  C  ACPV    ++  + E  +             R   EF           RI 
Sbjct: 60  CVACNLCAVACPV--GCISLQKAETKDG------------RWYPEFF----------RIN 95

Query: 218 PSLCIGCGNCVDVCP 232
            S CI CG C + CP
Sbjct: 96  FSRCIFCGLCEEACP 110