Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., periplasmic nitrate reductase, ferredoxin-like protein from Agrobacterium fabrum C58

 Score = 59.7 bits (143), Expect = 6e-14
 Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 50/161 (31%)

Query: 80  DAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACP 139
           D  +C  C  CVE+CPT ++ M          +  +P + N    E  C  CG C  ACP
Sbjct: 32  DLAACSGCAKCVEACPTGIITM----------VGGLPSV-NFSAGE--CTFCGKCAQACP 78

Query: 140 VDAISHNNTGLYEIDVNL---C-----VSCKNCLKACPVENAIVTYSEPELSEKIEIAQN 191
               +  +   ++  + +   C     V C+ C  ACP E                    
Sbjct: 79  EPVFATPDAHSFDHVMAIGEGCLAFGNVDCQACRDACPTEA------------------- 119

Query: 192 IKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCP 232
           I+F R R G  F         +P +V   C GCG CV VCP
Sbjct: 120 IRF-RPRRGGPF---------VPALVEDACTGCGACVSVCP 150



 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 24/131 (18%)

Query: 49  CISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEA 108
           C  C+ C E+CP+  I+M            F AG C  CG C ++CP  V          
Sbjct: 36  CSGCAKCVEACPTGIITMVGGLPSVN----FSAGECTFCGKCAQACPEPVFATP------ 85

Query: 109 KELLWNVPKIINLLIDEEVC-----VSCGTCENACPVDAI----SHNNTGLYEIDVNLCV 159
                +     +++   E C     V C  C +ACP +AI          +  +  + C 
Sbjct: 86  -----DAHSFDHVMAIGEGCLAFGNVDCQACRDACPTEAIRFRPRRGGPFVPALVEDACT 140

Query: 160 SCKNCLKACPV 170
            C  C+  CPV
Sbjct: 141 GCGACVSVCPV 151



 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 34/135 (25%), Positives = 46/135 (34%), Gaps = 31/135 (22%)

Query: 221 CIGCGNCVDVCP-------GSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTA 273
           C GC  CV+ CP       G +         C   GKC + CP               T 
Sbjct: 36  CSGCAKCVEACPTGIITMVGGLPSVNFSAGECTFCGKCAQACPEPVFA----------TP 85

Query: 274 ECYIVDEEKCIG----------CRICYRSCNVPEAILISKETNLPYINP---EYCVRCGL 320
           + +  D    IG          C+ C  +C   EAI        P++     + C  CG 
Sbjct: 86  DAHSFDHVMAIGEGCLAFGNVDCQACRDACPT-EAIRFRPRRGGPFVPALVEDACTGCGA 144

Query: 321 CQNACPVDAIDYLKT 335
           C + CPV  I   +T
Sbjct: 145 CVSVCPVGVIKIKET 159



 Score = 45.8 bits (107), Expect = 8e-10
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 48  KCISCSACKESCPSDAISMEFNEEFKKEMPVFD---AGSCINCGNCVESCPTNVLEMGTL 104
           +C  C  C ++CP    +      F   M + +   A   ++C  C ++CPT  +     
Sbjct: 66  ECTFCGKCAQACPEPVFATPDAHSFDHVMAIGEGCLAFGNVDCQACRDACPTEAIRFRPR 125

Query: 105 RKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNT 148
           R         VP ++     E+ C  CG C + CPV  I    T
Sbjct: 126 RGGPF-----VPALV-----EDACTGCGACVSVCPVGVIKIKET 159



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 50  ISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEAK 109
           + C AC+++CP++AI           +P     +C  CG CV  CP  V+++    +E +
Sbjct: 106 VDCQACRDACPTEAIRFR-PRRGGPFVPALVEDACTGCGACVSVCPVGVIKIKETARETQ 164



 Score = 37.7 bits (86), Expect = 2e-07
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 25/114 (21%)

Query: 230 VCPGSIDLERLKVTSCIKSGKCLEVCPTTAI-RIGVPEKITKRTAECYIVDEEKCIGCRI 288
           +CP  + L  L   +C    KC+E CPT  I  +G    +     EC          C  
Sbjct: 23  ICPPGVALSDL--AACSGCAKCVEACPTGIITMVGGLPSVNFSAGECTF--------CGK 72

Query: 289 CYRSCNVP----------EAILISKETNLPYINPEYCVRCGLCQNACPVDAIDY 332
           C ++C  P          + ++   E  L + N    V C  C++ACP +AI +
Sbjct: 73  CAQACPEPVFATPDAHSFDHVMAIGEGCLAFGN----VDCQACRDACPTEAIRF 122



 Score = 22.3 bits (46), Expect = 0.010
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 47  EKCISCSACKESCPSDAISME 67
           + C  C AC   CP   I ++
Sbjct: 137 DACTGCGACVSVCPVGVIKIK 157