Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 163 a.a., NADH ubiquinone oxidoreductase chain I from Agrobacterium fabrum C58

 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 13/85 (15%)

Query: 125 EEVCVSCGTCENACPVDAIS-----HNNTGL-----YEIDVNLCVSCKNCLKACPVENAI 174
           EE C++C  CE  CP  AI+       N G      Y+ID+  C+ C  C +ACPV+ AI
Sbjct: 60  EERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVD-AI 118

Query: 175 VTYSEPELSEKIEIAQNIKFDRERL 199
           V    P      E  + + FD++RL
Sbjct: 119 V--EGPNFEFATETREELYFDKQRL 141



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 16/85 (18%)

Query: 280 EEKCIGCRICYRSCNVPEAILI---------SKETNLPYINPEYCVRCGLCQNACPVDAI 330
           EE+CI C++C   C   +AI I         ++ T    I+   C+ CG CQ ACPVDAI
Sbjct: 60  EERCIACKLCEAICPA-QAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118

Query: 331 -----DYLKTETSEDLY-SKRKIRD 349
                    TET E+LY  K+++ D
Sbjct: 119 VEGPNFEFATETREELYFDKQRLLD 143



 Score = 44.3 bits (103), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 47  EKCISCSACKESCPSDAISMEF----NEEFKKEMPV-FDAGSCINCGNCVESCPTNVLEM 101
           E+CI+C  C+  CP+ AI++E     N+  ++ +    D   CI CG C E+CP + +  
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 102 G 102
           G
Sbjct: 121 G 121



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 84  CINCGNCVESCPTNVL--EMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVD 141
           CI C  C   CP   +  E G  R +         + +   ID   C+ CG C+ ACPVD
Sbjct: 63  CIACKLCEAICPAQAITIEAGPRRNDGTR------RTVRYDIDMVKCIYCGFCQEACPVD 116

Query: 142 AI 143
           AI
Sbjct: 117 AI 118



 Score = 33.5 bits (75), Expect = 4e-06
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 48  KCISCSACKESCPSDAI----SMEFNEEFKKEMPVFDAGSCINCGN 89
           KCI C  C+E+CP DAI    + EF  E ++E+  FD    ++ G+
Sbjct: 102 KCIYCGFCQEACPVDAIVEGPNFEFATETREEL-YFDKQRLLDNGD 146



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 221 CIGCGNCVDVCPG-SIDLER---------------LKVTSCIKSGKCLEVCPTTAIRIGV 264
           CI C  C  +CP  +I +E                + +  CI  G C E CP  AI  G 
Sbjct: 63  CIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGP 122

Query: 265 PEKITKRTAECYIVDEEKCI 284
             +    T E    D+++ +
Sbjct: 123 NFEFATETREELYFDKQRLL 142