Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 411 a.a., NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Sphingobium sp. HT1-2

 Score =  116 bits (290), Expect = 1e-30
 Identities = 97/384 (25%), Positives = 176/384 (45%), Gaps = 46/384 (11%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +  GP HP     LR+ + ++GE V+  +  +G +HRG E+++E K Y++ +   +R+  
Sbjct: 29  INFGPQHPAAHGVLRLVMELDGEIVERCDPHVGLLHRGTEKLIEHKTYMQALPYFDRL-D 87

Query: 64  ICSYIHTQ-SFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLG 122
            CS +  + S+   +E + ++EVP +A+YLRV   EL RI +H++    + + +   T  
Sbjct: 88  YCSPLGMEHSYVLAVEKLLNLEVPLRAQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPN 147

Query: 123 IWMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDE-----FEEDV 177
           +W+  +RE  ++  E  +G R++  +   GGV  D+  ++L  I   +D      FE+ +
Sbjct: 148 LWLFEIREDCLNFFERASGARMHSAYFRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAM 207

Query: 178 KNIIEVFETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYK 233
             +++      +   R+  I  +  ++ +K   +GP+ R SGI    W IR    ++ Y 
Sbjct: 208 SLVVD----NRIFKQRNVDISIVSKEDALKWGFSGPMLRGSGIA---WDIRKAQPYDVYD 260

Query: 234 ALNFKPDWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAE-------------SSGIVR 280
            + F        D Y R MVR +EV  S  ++++ L    E               G ++
Sbjct: 261 RMEFDVPVGTAFDCYDRFMVRVEEVRQSARIMKQCLSEMPEGPIASFDRKVSPPKRGEMK 320

Query: 281 NKAEIRATEGEWYNEAHR---GEVY---------YKIAITDGGLIK--RIIIRTPTVMNL 326
              E      + Y E      GEVY         + + +   G  K  R  IR     +L
Sbjct: 321 KSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYLVSDGSNKPYRCKIRPTAFSHL 380

Query: 327 EAYKYMIKDCPTIADAVATYTSID 350
           +A  +M+K    +AD  A   ++D
Sbjct: 381 QAMDFMMKG-HMLADTTAVLGAMD 403