Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 392 a.a., NADH-quinone oxidoreductase subunit D from Magnetospirillum magneticum AMB-1

 Score =  113 bits (282), Expect = 1e-29
 Identities = 98/378 (25%), Positives = 165/378 (43%), Gaps = 35/378 (9%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +  GP HP     LR+ L + GE V  A+  +G +HRG E+++E K YL+     +R+  
Sbjct: 11  INFGPQHPAAHGVLRLILEMSGEVVDRADPHVGLLHRGTEKLIEHKTYLQATPYFDRLDY 70

Query: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123
           + +     +F    E +  I++P +AK++R +  E+ RI +HL+    +   +   T  +
Sbjct: 71  VGTMNQEHAFVLATEKLLGIDIPIRAKFIRTLYDEIGRILNHLLNVTAFIFDVGGMTPLL 130

Query: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEV 183
           +    RE +M+  E + G R++  +   GGV  DL   +L+ I    + F + + +I  +
Sbjct: 131 YGFEEREKLMEFYERVCGARLHANYYRPGGVAADLPAGLLEDIAAWCETFPKVLDDIETL 190

Query: 184 FETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKP 239
                +   R   IG +  ++ +     GP  RASGI    W +R    ++ Y  + F  
Sbjct: 191 ATDNRIFKQRVVDIGVVSPEQALDWGFTGPNLRASGIA---WDLRKSQPYDVYDQMEFDI 247

Query: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHY------AESSGIVRNKAE--------- 284
                GD Y R +VR  E+  SV+++++ +          E + I   K           
Sbjct: 248 PVGKNGDGYDRYLVRVLEMRESVKIMKQCIAKMPGGPVRVEDNKITPPKRSEMKTSMESL 307

Query: 285 ----------IRATEGEWYN--EAHRGEVYYKIAITDGGLIKRIIIRTPTVMNLEAYKYM 332
                      +   GE Y   EA +GE    +     G   R  IR P  ++L+A   M
Sbjct: 308 IHHFKLFTEGFKVPAGEVYGAIEAPKGEFAVYLVSDGTGKPYRCKIRPPGYVHLQALDMM 367

Query: 333 IKDCPTIADAVATYTSID 350
            K    +AD VA   SID
Sbjct: 368 SKG-HMLADVVANIGSID 384