Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 571 a.a., hydrogenase 4 catalytic subunit HyfG from Escherichia coli ECOR38

 Score =  181 bits (459), Expect = 5e-50
 Identities = 115/359 (32%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 3   VVPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKH-YLKCIHLSERV 61
           V+P+GP+H    EP   +L V+GE +  A+  + YVHRG+E++ E +  Y +   LS+RV
Sbjct: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242

Query: 62  CGICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETL 121
           CGIC + H+ ++   +EN   IEVP++A  +R I  E+ER+HSHL+   +    +  +T 
Sbjct: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302

Query: 122 GIWMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNII 181
            +    VRE  M + EL+TG+R   G N++GGVR D+ KE   +  K + E   DV  ++
Sbjct: 303 FMQFFRVREKSMTMAELLTGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMHADVSELV 362

Query: 182 EVFETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIRH--ETYKALNFKP 239
           E+    P +  R++ IG +  +        GP+ R SG    D R  H    Y  +    
Sbjct: 363 EMLLATPNMEQRTQGIGILDRQIARDYSPVGPLIRGSGFAR-DLRFDHPYADYGNIPKTL 421

Query: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVRNKAEIRATEGEWYNEAHRG 299
                GD ++R+MVR  E   S+ ++  AL++  ++  +    +         + EA RG
Sbjct: 422 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRG 481

Query: 300 EVYYKIAITDGGLIKRIIIRTPTVMNLEAYKYMIKDCPTIADAVATYTSIDPCVSCTER 358
           E  +   + D   + R   R  T  N    +YM++   T++DA     S+DPC SCT+R
Sbjct: 482 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG-NTVSDAPLIIGSLDPCYSCTDR 539