Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 396 a.a., NADH ubiquinone oxidoreductase chain D from Agrobacterium fabrum C58

 Score =  120 bits (301), Expect = 6e-32
 Identities = 96/382 (25%), Positives = 167/382 (43%), Gaps = 39/382 (10%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +  GP HP     LR+ L ++GE V+  +  +G +HRG E+++E K YL+ +   +R+  
Sbjct: 11  INFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDY 70

Query: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123
           +       +FA  +E +  +E+P + + +RV+  E+ RI SH++      + +   T  +
Sbjct: 71  VAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGAMTPPV 130

Query: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEV 183
           W    RE +M   E   G R++  +   GGV  DL  E++D I K  D F   + NI  +
Sbjct: 131 WGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPPELVDDIGKWCDPFLTVLDNIEGL 190

Query: 184 FETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKP 239
                +   R+  IG +  ++       G + R SG   + W +R    +E Y  L F  
Sbjct: 191 LTDNRIYKQRNVDIGVVSLEDAFAWGFTGVMVRGSG---AAWDLRRSQPYECYSDLEFDI 247

Query: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHYA-----------------ESSGIVRNK 282
                GD Y R ++R  E+  SV+++++ ++  +                    G ++  
Sbjct: 248 PVGKNGDCYDRYLIRMQEMRESVKIMKQCVDRLSGKHRIGPVSSLDGKVVPPKRGEMKRS 307

Query: 283 AEIRATEGEWYNEAHR---GEVYYKI----------AITDG-GLIKRIIIRTPTVMNLEA 328
            E      + Y E +    GEVY  +           + DG     R  IR P   +L+A
Sbjct: 308 MEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYVVADGSNKPYRCKIRAPGYAHLQA 367

Query: 329 YKYMIKDCPTIADAVATYTSID 350
             ++ K    +AD  A   S+D
Sbjct: 368 MDFLCKG-HQLADVTAVLGSLD 388