Pairwise Alignments

Query, 286 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis S2

Subject, 315 a.a., hydrogenase 4 membrane subunit (VIMSS) from Escherichia coli BW25113

 Score = 62.4 bits (150), Expect = 1e-14
 Identities = 78/299 (26%), Positives = 127/299 (42%), Gaps = 29/299 (9%)

Query: 5   LMYALYAFLVGGILLGFHRKLMARVQCRPGPPIIQYLIHTFKFYFKELTFPISAG--NPL 62
           L  A+   ++  +  G  R++ AR+  R GP I Q      K + ++   P S+G    L
Sbjct: 15  LAQAVILLMLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSGLMFRL 74

Query: 63  YVFVALMDVMVWMSALSIAVVFE-----SSLLILIGLYILQKIVEHGCGLSSGSPYGKVG 117
             +V +  ++V   AL + +          L+ LI L  L +      GL +GSP+  VG
Sbjct: 75  MPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSPFAGVG 134

Query: 118 GVRSVFSAAAEIPLFAAAGIVYTV----THSLIIGDIINYQAVNGPL--IFQLPICAFAV 171
             R +       P+   + +V  +    TH  +I + +     N PL  +  L  C FA 
Sbjct: 135 ASRELTLGILVEPMLILSLLVLALIAGSTHIEMISNTL-AMGWNSPLTTVLALLACGFAC 193

Query: 172 FVLVLSKAPFSPFAIVKGKDIISGYLTEHYGPLEAIIMIGDAIAWFVLLWLFMALFLG-- 229
           F+  + K PF        +++  G LTE+ G   A+   G  +   V+  LF+ALFL   
Sbjct: 194 FI-EMGKIPFD--VAEAEQELQEGPLTEYSGAGLALAKWGLGLKQVVMASLFVALFLPFG 250

Query: 230 -------PLIVASPVLTLLG---MFVLTIIISFICALTPLLAPNHSVMLQITIASLTLI 278
                    ++ S V+TLL    +FVL  I     A    L  +H   L  ++A+L  +
Sbjct: 251 RAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRFLLIHHVTWLGFSLAALAWV 309