Pairwise Alignments

Query, 286 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis S2

Subject, 307 a.a., hydrogenase 3, membrane subunit from Escherichia coli BL21

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 22/240 (9%)

Query: 5   LMYALYAFLVGGILLGFHRKLMARVQCRPGPPIIQYLIHTFKFYFKELTFPISAG----- 59
           L+ AL  F V  +L G  R   AR+  R GP ++Q     FK   ++   P ++G     
Sbjct: 7   LIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDMFKLLGRQSVGPDASGWVFRL 66

Query: 60  NPLYVFVALMDVMVWMSALSIAVVFE-----SSLLILIGLYILQKIVEHGCGLSSGSPYG 114
            P YV V +M  +   +AL +  V         L+ L+ L+ + +      GL +GSP+ 
Sbjct: 67  TP-YVMVGVM--LTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFT 123

Query: 115 KVGGVRSVFSAAAEIP-----LFAAAGIVYTVTHSLIIGDIINYQAVNG-PLIFQLPICA 168
            +G  R         P     L+ AA +  +   S I   + ++      PL+  L  CA
Sbjct: 124 AIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACA 183

Query: 169 FAVFVLVLSKAPFSPFAIVKGKDIISGYLTEHYGPLEAIIMIGDAIAWFVLLWLFMALFL 228
           FA F+  + K PF        +++  G L+E+ G    ++  G ++   V+L +F+ +F+
Sbjct: 184 FATFI-EMGKLPFD--LAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFI 240