Pairwise Alignments

Query, 225 a.a., 30S ribosomal protein S5 from Methanococcus maripaludis S2

Subject, 236 a.a., SSU ribosomal protein S5p (S2e) from Sphingobium sp. HT1-2

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 56  DLEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKL 115
           +L E+++ +  V +  K G+R  + A VVVG+  G  G G GK++EV  AI KA A AK 
Sbjct: 61  ELIEKLVHINRVSKTVKGGKRFGFAALVVVGDGKGRAGFGHGKAREVPEAISKATASAKK 120

Query: 116 SLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAG 175
           ++++V +  G          ++     G  G+ KV +  AP G G++AG   +AV    G
Sbjct: 121 AMVRVPLKEG---------RTLHHDGLGHFGAGKVTVRSAPAGTGIIAGGPMRAVFESLG 171

Query: 176 VKDAWTKTFGDTRTTYNFAEATFDALNNLNFVRCLPNQKEK 216
           V D  TK+ G T   YN   ATF AL      + +  ++ K
Sbjct: 172 VADVVTKSNG-TSNPYNMIRATFAALGEQTSPKSVAQRRGK 211