Pairwise Alignments

Query, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

Subject, 1171 a.a., Chromosome partition protein smc from Variovorax sp. SCN45

 Score =  205 bits (522), Expect = 2e-56
 Identities = 263/1270 (20%), Positives = 518/1270 (40%), Gaps = 199/1270 (15%)

Query: 4    LSEIHMKNFKSFKN-SKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62
            L+ I +  FKSF   +   +P     ++GPNG GKSN +D + +VLG++ A  LR     
Sbjct: 3    LNSIKLSGFKSFAEPTNFLLPGQLVGVVGPNGCGKSNIMDAVRWVLGESRASELRGESMQ 62

Query: 63   QLITYHNG----KRENFAEVTLIFDNKDRKMPVDSDKVG---ISRKVKINGDNNYYLIWN 115
             +I   NG    K+ + + V L+FDN D +     ++ G   + R +  +G ++YY+   
Sbjct: 63   DVI--FNGTTTRKQASRSSVELVFDNADHRAGGQWNQFGEIAVRRVLTRDGTSSYYI--- 117

Query: 116  EEKEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNER 175
                               + V++ ++ DV     L    + II QG + +II++ P E 
Sbjct: 118  -----------------NNQPVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESKPEEL 160

Query: 176  RKIIDEISGVAEFDEKGEKAKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVK 235
            R  ++E +GV+++ E+  + +  L   RE + +++  + E+  NLEKL+K+ E A  +  
Sbjct: 161  RLFLEEAAGVSKYKERRRETENRLGDTRENLTRVEDILRELNANLEKLEKQAEVAARYNL 220

Query: 236  LTEELKATKYILTSKK---------------------IEFLNGILEKTKEEIEALKEMKV 274
            L  +    ++ L   K                     +E     L + + E+E +++   
Sbjct: 221  LQGDATKKQHQLWFLKRSESNADQAKIKADSEKAINDLESRTADLRRIESELETVRQAHY 280

Query: 275  CFLKEISEYDAKSNDIRNRLQNLINELN------EKGNEEIMELHKSIKEM---EVTVDN 325
                ++++   K  +    +  L  E+       ++  + +++L + + +        + 
Sbjct: 281  GAGDQVNQAQGKLYEASAEVGRLEGEIRFVVEGRQRVEQRLVQLREQMGQWGRRREEAEA 340

Query: 326  DKKSLNGALDDLKN----VNSQSEKKGQDLVETRQKIETI-------RTETLQKEAEINA 374
            + ++L GA  D +     + +Q E+    + E  + ++         RT   Q + +I  
Sbjct: 341  EIETLAGAGVDAEEQAILLAAQLEEHDARMPELEEAVQRAQDQANAQRTTVSQVQQQIQV 400

Query: 375  LKTEMENLETEKKKLKSKVEE---------SETQTEILKQQERKLSE---------RINE 416
            L  +  N+E + ++L  + E          +  +  +L  QE+  +          R+ E
Sbjct: 401  LAADQRNIEEQSRQLTQRSERLRADQNALAAPDEARLLDMQEQHAAAQEAASESDARLQE 460

Query: 417  SQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELEEIRSEHEDTKSLYKE---- 472
             Q  +    ++  A +  +N +    A+    ++ L+   E+++++ +    L K     
Sbjct: 461  LQETVPQLDDDRRARQQAVNTEGARHAEFSARLDALRALQEKVKTDGKLAPWLAKHGLDG 520

Query: 473  LEDVAVELEYSKKKVVTLLENKKEYQDRLDKSHADYIKENAKIKAMKDMEDFSLDRAVKS 532
            L+ +   +   +     L    +E    L+ S  D ++          +  +S   A   
Sbjct: 521  LQGLWSRIHIEQGWESALEAALRERLGALEVSRLDMVRAFGNDAPPAKLAFYSPPAA--- 577

Query: 533  VLEAKLPGVVDIAGNLGKTDAEYKTAIENAGGNRLNYIVVKRMDDGARAIQYLKKNNLGR 592
                   GV + A  L +  +  +  + +AG   L    +     G       ++    R
Sbjct: 578  -------GVPESAAALPRLSSLLR--LNDAGQQAL----LTGWLHGCYTADSFEEALAQR 624

Query: 593  TTFLPLDRINGPEALYLDDEGVVGRAID-----LVEFKPEHENLFRYVFGNTIIVEN--- 644
             T  P + I       +    V   A D     ++  + E ENL R +   T+I E    
Sbjct: 625  ATLQPGEVIYVKSGHAVSSHSVNFYAPDSEQAGMLARQQEMENLERQLRAQTLINEEART 684

Query: 645  -LDYAKTLSKDHRARFVTLEGEVIEPSGAMIGGRSRKKSVIKVDIDTSKLEKLAEDI--- 700
             L  A+    D   R VT   E  E           +    ++ ++T ++ +LAE     
Sbjct: 685  ALVRAEAAYADAAQRLVTARREAAET----------QSRAHELQVETLRMTQLAEQTRAR 734

Query: 701  -SELDGTLSETKDEIERLQNKNATYSTRKMELESRLKIIKDLEHKKEGILTNNGVKIKEL 759
              +L   L E   ++E LQ +  +   R  EL+ +L   ++   + +  +   G  +   
Sbjct: 735  SQQLAADLGEVDAQLEELQERRISAEGRFEELDMQLADSQERHAELDERVIEAGRALNAS 794

Query: 760  ELESRKLEEELDYLEGSKEELERKIEEFTKKISGFTSQRDRISEEIASFENSEHSKRIKV 819
              + R LE +      S+  LE +  E  + I       +  ++++ S  + +   R ++
Sbjct: 795  REQHRSLERQAQEATFSQRTLEARRGELNRSI-------ETAAQQVVSLTDEDERARAEL 847

Query: 820  IDENIIAFEKKKNEFENEIKRDAVLIKEVLIPKISELNSNIKELSEKRTILEQNIQFYKN 879
                     +  +       +DA+ +K                       LE+       
Sbjct: 848  --------SRLSDAAAQAGLQDALALK-----------------------LEREAA---- 872

Query: 880  NVEKNFEILKNKKERYEDLTKDLRELTEKKEAFEKELEILNGEKRRVYGRINQNESQINS 939
                    L + + +Y+DLT  LR   E++   E+EL+ L         RI + + +  +
Sbjct: 873  --------LGSARSQYDDLTLKLRASDERRLQLERELDPLRQ-------RITEFQLKEQA 917

Query: 940  LSIDKAKYETRLEEEDRKLYVCENIEQISEDITSKIKEFDVDALESHQIDLEGHIKKLEP 999
              +   +Y+  L++    L   E IEQ  E  T K++   +  L+S    L   +  L  
Sbjct: 918  ARLGVEQYQQLLDDAGADL---EAIEQSIE--TDKVR---LTGLQSEIDRLNREVVALGA 969

Query: 1000 VNMRAIDDYQYIVDRYDELFEKRTDYENEEKKYLHLIEEVSKRKKEVFMDVYLKVAENYE 1059
            VN+ A+D+     +R   L  +  D           I ++    +++    +  V +++ 
Sbjct: 970  VNLAALDELAIASERKIFLDAQSADLNEAIGTLEDAIRKIDAETRDLLGGTFKIVNDHFS 1029

Query: 1060 KIYTEIGGSGKLSLENPEDPF-SGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQ 1118
            +++ E+ G G   L    D     G+ + A P  KK Q++ ++SGGEK+LTA+A +FAI 
Sbjct: 1030 RMFPELFGGGNAKLMMTGDEILDSGVQVMAQPPGKKNQTIHLLSGGEKALTAIALVFAIF 1089

Query: 1119 HLNPAPFYVLDEVDAALDTKNAGLIGEMIKNASKDSQFIVISHREQMISKSDVMYGVCM- 1177
             LNPAPF +LDEVDA LD  N     +++   S+++QF+ ISH +  +  ++ + GV M 
Sbjct: 1090 QLNPAPFCLLDEVDAPLDDANTERYAKLVTAMSRETQFLFISHNKIAMEMAEQLIGVTMQ 1149

Query: 1178 ENGLSKLVGL 1187
            E G+S++V +
Sbjct: 1150 EQGVSRIVAV 1159