Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 72/316 (22%), Positives = 131/316 (41%), Gaps = 35/316 (11%)

Query: 243 SITVNKSELLGLNKKIMAMDDNIKYEMLRISSEAVKLEHAIEMLETQGKSTFLNYYQKLL 302
           ++ + + E+L L++    +D     ++ R+ SE V  +  +    T G ST      K+L
Sbjct: 140 NLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQTMLFSATTGGSTLREMVAKVL 199

Query: 303 TQNTKSAKEITNDPRFIQAVKNLNELD------IEHPKYEKMLEIVKEILKENE---KIV 353
                      N+P  +Q V N+++L+      I    +    E +   L  NE   K +
Sbjct: 200 -----------NNPEHLQ-VNNVSDLNATTRQQIVTADHNVHKEQILNWLLANETYQKAI 247

Query: 354 IFAQYRDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAKAIEKFK-NEANVLVST 412
           +F   R    +I   L   E +A +  G+ +       QK++  AI++ K     +LV+T
Sbjct: 248 VFTNTRAAADRIYGRLVAQEYKAFVLHGEKD-------QKDRKLAIDRLKAGGVKILVAT 300

Query: 413 SVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVIVLIAQKTRDEGYYRAG 471
            V+  G+D+  ++ V+ ++   S    + R GR  R G  G  I LI     +       
Sbjct: 301 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 360

Query: 472 LAKEKNMKNILKNMQATLN--KKLKELNEENEEESEKTENKDHYMDLRSVVSSKTSDKLE 529
             K+   +  +K ++ T    KK+K   +    + +KT+ K      ++   S T  K+ 
Sbjct: 361 YLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKGD--KKKTGAKSPTKRKIA 418

Query: 530 EN-KPTKLDKKSKSGL 544
              K   L   SK G+
Sbjct: 419 NRPKTDNLSLVSKDGM 434