Pairwise Alignments

Query, 752 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 37  TGLGKTAIAALTIAGILSK-------RNGKVLIIAPSRPLVDQHFKSMNQFLNIDSEKIV 89
           TG GKTA   L I  +L K       R  + LI+AP+R LV+Q   ++  F+     +I 
Sbjct: 60  TGTGKTAAFGLPIIEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRIN 119

Query: 90  ILNGKISPKKREAMWESG-KIFIATPQVAENDIISKILKPSQFSLLIADEA 139
            + G  S  K++   E G  I +ATP    + I    +  S+ + L+ DEA
Sbjct: 120 QVVGGASINKQQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEA 170



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)

Query: 340 EIVKEILKENE--KIVIFAQYRDTVQKIVDLLSENEIEAIMFVGQSNKDGKGMSQKEQAK 397
           +++K+ L EN   + ++F + +   +K+        +E I F   S    K   Q+E  +
Sbjct: 247 DLLKKSLNENPDGRSIVFLRTKHGAEKLY-----KHLEHIGFKVASIHGNKSQGQRE--R 299

Query: 398 AIEKFKN-EANVLVSTSVSEEGIDISSVNYVLFYEPVPSEIRMIQRRGRAAR-GEGGQVI 455
           A++ FK+ E  VLV+T V+  GIDI +V +V  Y+        + R GR AR G  G  I
Sbjct: 300 ALKGFKDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAI 359

Query: 456 VLIA 459
              A
Sbjct: 360 AFCA 363