Pairwise Alignments

Query, 480 a.a., RNA-splicing ligase RtcB from Methanococcus maripaludis S2

Subject, 405 a.a., 'RNA-2',3'-PO4:RNA-5'-OH ligase' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  154 bits (390), Expect = 4e-42
 Identities = 134/428 (31%), Positives = 197/428 (46%), Gaps = 77/428 (17%)

Query: 39  LQEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVGFDINC 98
           +++D  +Q+ N A +P I K+   MPD H G G  IG V       G I P  VG DI C
Sbjct: 23  VEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIP---TKGAIIPAAVGVDIGC 79

Query: 99  GVRLVKTNLTKNDVTPKLKELLSEIFKNVPSG---------LGSKGKIRITKDEIDSVLE 149
           G+  ++T+LT  D+   L +L S I   VP G         +G+ G      +E  + LE
Sbjct: 80  GMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLE 139

Query: 150 EGVSWAVEEEYGWERDIKHIEEHGKMKEADPTLVSDNAKKRGLPQLGSLGSGNHFLEVQY 209
            G  W  ++                     P  ++ N  K     LG+LG+GNHF+E+  
Sbjct: 140 AGYQWLTQKY--------------------PRFLNTNNYKH----LGTLGTGNHFIEI-- 173

Query: 210 VDEIFDEEAAKTFGVSPDQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLA 269
                DE          D+V +M+H+GSRG+G+ I   ++   +   ++    LP R LA
Sbjct: 174 ---CLDET---------DRVWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLA 221

Query: 270 CAPINSEEGQKYFKAMSCGANYAWANRQ-LITHWIRESFESVFKTSAEDLEMDIIYDVAH 328
                SE    Y KA+     +A  NR+ ++ + +      V K SA  L+MD I +  H
Sbjct: 222 YFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVEKPSA--LDMDEI-NCHH 278

Query: 329 NIAKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPGDMGTASYLMH 388
           N  +KEQH  +     + V RKGA  A               G+  IIPG MG  S+++ 
Sbjct: 279 NYVQKEQHFGE----EIYVTRKGAVSA-------------RRGEFGIIPGSMGAKSFIVR 321

Query: 389 GTEKAMEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADSKGVIAEECPE 448
           G     E++F S +HGAGR +SR KA KL++ ++   A         AD    + +E P 
Sbjct: 322 GL--GNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHVECRKDAD----VIDEIPM 375

Query: 449 AYKDIENV 456
           AYKDI+ V
Sbjct: 376 AYKDIDAV 383