Pairwise Alignments

Query, 480 a.a., RNA-splicing ligase RtcB from Methanococcus maripaludis S2

Subject, 379 a.a., RNA ligase RtcB family protein from Escherichia coli ECRC62

 Score =  124 bits (310), Expect = 7e-33
 Identities = 130/453 (28%), Positives = 192/453 (42%), Gaps = 103/453 (22%)

Query: 32  DELLFENLQEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGG 91
           D+L  E+L     +Q+   A LP +Q+  + MPD H G G+ IG  AAF  V G   P  
Sbjct: 18  DDLWIESL---AIQQLHTTANLPNMQRV-VGMPDLHPGRGYPIG--AAFFSV-GRFYPAL 70

Query: 92  VGFDINCGVRLVKTN-LTKNDVTPKLKELLSEIFKNVPSGLGSKGKIRITKDEIDSVLEE 150
           VG DI CG+ L +T+ LT+     K ++ LS++                     D V EE
Sbjct: 71  VGNDIGCGMALWQTDILTRKYNADKFEKRLSDL---------------------DDVAEE 109

Query: 151 GVSWAVEEEYGWERDIKHIEEHGKMKEADPTLVSDNAKKRGLPQLGSLGSGNHFLEVQYV 210
             SW  E                        L S  A+      LGS+G GNHF E+Q V
Sbjct: 110 --SWLEEN-----------------------LPSAFAQHPWRSSLGSIGGGNHFAELQQV 144

Query: 211 DEIFDEEAAKTFGVSPDQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLAC 270
           D+I + E     G+    + L++H+GSRG+G  I   ++    +                
Sbjct: 145 DQIINAELFALAGLDAQHLQLLVHSGSRGVGQSILQRHIASFSHHG-------------- 190

Query: 271 APINSEEGQKYFKAMSCGANYAWANRQLITHWIRESFESVFKTSAEDLEMDIIYDVAHNI 330
            P  S++  +Y         +A  NRQ+I   I +  ++             + DVAHN 
Sbjct: 191 LPQGSDDALRYIAEHDDALAFACINRQMIALRIMQQVKATGSP---------VLDVAHNF 241

Query: 331 AKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPGDMGTASYLMHGT 390
               Q + D   +   +HRKGAT          P D       VIIPG  G  S+++   
Sbjct: 242 VSACQ-IGD---QQGWLHRKGAT----------PDD----NGLVIIPGSRGDYSWIVQPV 283

Query: 391 EKAMEQTFGSTAHGAGRALSRV----KALKLYTGNEVQEALQKKGILVMADSKGVIAEEC 446
             A E+T  S AHGAGR   R     +    YT  ++     + G  V+   K +I EE 
Sbjct: 284 --ANEKTLHSLAHGAGRKWGRTECKGRLAAKYTVTQLSRT--ELGSRVICRDKQLIFEEA 339

Query: 447 PEAYKDIENVADICHDSGISLKVAKMKPMGVVK 479
           P+AYK  E+V      +G+ + VA+++P+  +K
Sbjct: 340 PQAYKSAESVVQCLVQAGLIIPVARLRPVLTLK 372