Pairwise Alignments

Query, 480 a.a., RNA-splicing ligase RtcB from Methanococcus maripaludis S2

Subject, 465 a.a., RNA-splicing ligase RtcB from Escherichia coli ECOR38

 Score =  142 bits (359), Expect = 2e-38
 Identities = 127/454 (27%), Positives = 196/454 (43%), Gaps = 57/454 (12%)

Query: 39  LQEDVFEQIANVACL-----PGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVG 93
           L+E V  Q+ + A +     PG  + + A PD H G G  +G V A      ++ P  +G
Sbjct: 45  LEEKVVTQLLDFAEVKIPDHPGYVRQTCATPDFHPGNGVPVGAVVA--STPDLVIPAAIG 102

Query: 94  FDINCGVRLVKTNLT-------KNDVTPKLKELLSEIFKNVP-SGLGSKGKIRITKDEID 145
            DI+CG+RL+ T LT       K  +T +L ++L +  ++VP S             +  
Sbjct: 103 TDISCGMRLLTTGLTLEQAEANKEIITQRLTQVLLQNERDVPLSARAFTALFDGGPADCM 162

Query: 146 SVLEEGVSWAVEEEYGWERDIKH---IEEHGKMKEADPT--LVSDNAKKRGLPQLGSLGS 200
           S L     W         ++I     + EH       P   LV+D    R  P LG+ GS
Sbjct: 163 SALPSAGLWTRTNIPRMTQEIDRCIGLNEHNSHSRYAPPALLVTDRPLLRD-PCLGTPGS 221

Query: 201 GNHFLEVQYVDEIFDEEAAKTFGVSPDQVVLMIHTGSRGLGHQICADYLRYMENAAKKYN 260
           GNHF+E+Q VD + D   A   G+    +V+MIH+GSR +G  +     R+M+ A  ++ 
Sbjct: 222 GNHFIELQVVDSVVDRHVAWQQGLKTGDIVVMIHSGSRDVGFYVGR---RWMDRARAEWP 278

Query: 261 IKLPDRQLACAPINSEEGQKYFKAMSCGANYAWANRQLITHWIRESFESVFKTSAEDLEM 320
                 Q     +     ++Y +AM   A YAW NR  I   +R    ++F      L  
Sbjct: 279 TGHKHPQSGLYGLAGGLAEEYLQAMGMAARYAWLNRVTIAEMVRVCLANLFHQDNSHL-- 336

Query: 321 DIIYDVAHNIAKKEQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPGDM 380
             + DV HNI  +E  +         +HRKGAT A               G   +IPG M
Sbjct: 337 --VVDVPHNIILREHEM--------NIHRKGATPA-------------RAGNLALIPGSM 373

Query: 381 GTASYLMHGTEKAMEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADSKG 440
           G  S+L  G      +   S +HGAGR+  R    +       +E+      + + + + 
Sbjct: 374 GDYSWLAVGC--GNPEWLWSCSHGAGRSQRR----QAMHSRATEESTLPWQCVTLREERR 427

Query: 441 VIAEECPEAYKDIENVADICHDSGISLKVAKMKP 474
           +  EE P AYKDI  V +   ++G+     + +P
Sbjct: 428 I--EEAPAAYKDIGPVIEAQQEAGLIHPAVRFRP 459