Pairwise Alignments

Query, 480 a.a., RNA-splicing ligase RtcB from Methanococcus maripaludis S2

Subject, 408 a.a., RNA-splicing ligase RtcB from Escherichia fergusonii Becca

 Score =  155 bits (391), Expect = 3e-42
 Identities = 131/423 (30%), Positives = 199/423 (47%), Gaps = 63/423 (14%)

Query: 39  LQEDVFEQIANVACLPGIQKYSLAMPDCHYGYGFCIGGVAAFDEVTGVISPGGVGFDINC 98
           +++D  +Q+ N A +P I K+   MPD H G G  IG V       G I P  VG DI C
Sbjct: 22  VEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIP---TKGAIIPAAVGVDIGC 78

Query: 99  GVRLVKTNLTKNDVTPKLKELLSEIFKNVPSGLGSKGKIRITKDEIDSV-LEEGVSWA-V 156
           G+  ++T LT  D+   L EL   I   VP G  + G+ +  K   +   +     WA +
Sbjct: 79  GMNALRTALTAADLPENLAELRQAIEAAVPHGR-TTGRCKRDKGAWEKPPVNVDAKWAEL 137

Query: 157 EEEYGWERDIKHIEEHGKMKEADPTLVSDNAKKRGLPQLGSLGSGNHFLEVQYVDEIFDE 216
           E  Y W            + +  P  ++ N  K     LG+LG+GNHF+E+       DE
Sbjct: 138 EAGYQW------------LTQKYPRFLNTNNYKH----LGTLGTGNHFIEI-----CLDE 176

Query: 217 EAAKTFGVSPDQVVLMIHTGSRGLGHQICADYLRYMENAAKKYNIKLPDRQLACAPINSE 276
                     DQV +M+H+GSRG+G+ I   ++   +   ++    LP R LA     +E
Sbjct: 177 S---------DQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTE 227

Query: 277 EGQKYFKAMSCGANYAWANRQLITHWIRESFESVFKTSA---EDLEMDIIYDVAHNIAKK 333
               Y KA++    +A  NR  +   +  + +S+ + +    + L M+ I +  HN  +K
Sbjct: 228 YFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEEI-NCHHNYVQK 286

Query: 334 EQHLVDGVLKNVVVHRKGATRAFGPGHAEIPSDYVNIGQPVIIPGDMGTASYLMHGTEKA 393
           EQH  +     + V RKGA  A               GQ  IIPG MG  S+++ G    
Sbjct: 287 EQHFGE----EIYVTRKGAVSA-------------RAGQYGIIPGSMGAKSFIVRGL--G 327

Query: 394 MEQTFGSTAHGAGRALSRVKALKLYTGNEVQEALQKKGILVMADSKGVIAEECPEAYKDI 453
            E++F S +HGAGR +SR KA KL++   V++ ++    +       VI +E P AYKDI
Sbjct: 328 NEESFCSCSHGAGRVMSRTKAKKLFS---VEDQIRATAHVECRKDAEVI-DEIPMAYKDI 383

Query: 454 ENV 456
           + V
Sbjct: 384 DAV 386