Pairwise Alignments

Query, 228 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 50.8 bits (120), Expect = 4e-11
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 176 CMGCGSCAAACPTRAVSMDAGRPLVDKEICIKCGACSVQCP 216
           C+GCG C + CP  A+S++  + +VDK+ CI C  C+  CP
Sbjct: 135 CVGCGVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCP 175



 Score = 44.7 bits (104), Expect = 3e-09
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 30/126 (23%)

Query: 117 VKCDLAIPGCPPSPESIVAVVLAALNGDMEYLEPYAELAKYGSEACGCDLIVK------- 169
           V C   +  CP S   +  VV  A        EP A       +  GC + +        
Sbjct: 95  VGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVT----EDCVGCGVCISECPVGAL 150

Query: 170 -------VINKSLCMGCGSCAAACPTRAVSMDAGRPL-----------VDKEICIKCGAC 211
                  V++K  C+ C  CA  CP  A+ + AG+             VD ++CI CG C
Sbjct: 151 SIEGEKAVVDKDSCIYCSICAQTCPWNAIFV-AGKKSPKRDKNIVKFSVDSDLCIGCGDC 209

Query: 212 SVQCPR 217
           + +CPR
Sbjct: 210 TDKCPR 215



 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 14/72 (19%)

Query: 159 SEACGCDLIVK----VINKSLCMGCGSCAAACPTRAVSM----DAGRPLV------DKEI 204
           ++ C  DLIV      +    C  CG C AACP  A+ +     + +P+       D+E 
Sbjct: 210 TDKCPRDLIVLNEMVAVPPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEK 269

Query: 205 CIKCGACSVQCP 216
           C  CG C+++CP
Sbjct: 270 CAYCGPCAIKCP 281



 Score = 39.7 bits (91), Expect = 9e-08
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 173 KSLCMGCGSCAAACPTRAVSMDA------------GRPLVDKEICIKCGACSVQCP 216
           K  C+GC  C  ACP   V M+               P+   E C+ CG C  +CP
Sbjct: 91  KGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECP 146



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 170 VINKSLCMGCGSCAAACPTRAVSMDAGRPLV-----------DKEICIKCGACSVQCP 216
           V ++  C  CG CA  CP  A+++   + L            + ++CI+CGAC   CP
Sbjct: 264 VWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCP 321



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 175 LCMGCGSCAAACPTRAVSM--------DAGRPLVDKEICIKCGACSVQCP 216
           +C+ CG+C  +CP  A+ +        +  R      +C  CG C   CP
Sbjct: 309 MCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCP 358



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 174 SLCMGCGSCAAACPTRAVSMDAGRPLVDKEICIKCGACSVQCPRIR 219
           +LC  CG C   CP   + +        +  C+ C  C   C + +
Sbjct: 345 NLCDSCGKCIETCPYDMLKLTGKSEKPLEGFCVMCLKCIEACDKAK 390



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 12/52 (23%)

Query: 175 LCMGCGSCAAACPTRAVSMDA----GRPLVDKEI------CIKCGACSVQCP 216
           +C  CG+C   CP  A+++      G+ +  K+I      C  CG C   CP
Sbjct: 31  VCQLCGNCVNVCPNDALNLREIELNGKTI--KQIAYFPTKCDLCGECVKVCP 80