Pairwise Alignments

Query, 228 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 252 a.a., hydrogenase 4, Fe-S subunit (NCBI) from Escherichia coli BW25113

 Score = 43.1 bits (100), Expect = 5e-09
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 18/139 (12%)

Query: 5   AHVQLSSCCGCLVSLADTYEQLLDVLGAIDLVYSQTLADVREI--PDDVDIVLLEGSVCL 62
           A+V    C GC           +++  AI  V+      ++ +  P   DI+L  G+V  
Sbjct: 34  AYVYRVDCGGCNACE-------IEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 86

Query: 63  SDHHAMEVALESRKKGKILVALGACAASGNITRFSKGNQPSKPVHDSFAPLTEVVKCDLA 122
           +       A ES    KI V+ GAC   G I            ++  +     +V  D+ 
Sbjct: 87  AMRMPALRAYESAPDHKICVSYGACGVGGGIFH---------DLYSVWGGSDTIVPIDVW 137

Query: 123 IPGCPPSPESIVAVVLAAL 141
           IPGCPP+P + +     AL
Sbjct: 138 IPGCPPTPAATIHGFAVAL 156



 Score = 23.1 bits (48), Expect = 0.005
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 188 TRAVSMDAGRPLV---DKEICIKCGACSV 213
           TRA+ M A R      D +IC+  GAC V
Sbjct: 85  TRAMRMPALRAYESAPDHKICVSYGACGV 113