Pairwise Alignments

Query, 242 a.a., ribonuclease HII from Methanococcus maripaludis S2

Subject, 198 a.a., RNase HII (EC 3.1.26.4) from Enterobacter asburiae PDN3

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 34/184 (18%)

Query: 21  KIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEMC 80
           +++ G+DE GRGP++G +V A+V +D         + L DSK+LS+K+R  L+  I E  
Sbjct: 10  RLVAGVDEVGRGPLVGAVVTAAVILDPARPI----IGLNDSKKLSEKRRLALFSEIQEKA 65

Query: 81  DVEKI-VIDPETIDKQMEIINLNKIELS---AFSKLSNHFIRENDNISIYIDACSSSEQS 136
               +   +P  ID ++ I++   + +    A  K+S  ++  + N       C +    
Sbjct: 66  LAWSLGRAEPHEID-ELNILHATMLAMQRAVAGLKISPEYVLIDGN------RCPALP-- 116

Query: 137 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----S 192
                        +  +A  K D     +SAASIIAKVTRD  +     T+ + G     
Sbjct: 117 -------------MPSMAVVKGDSRVAEISAASIIAKVTRDAEMAALDLTYPQYGFAQHK 163

Query: 193 GYPS 196
           GYP+
Sbjct: 164 GYPT 167