Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 28/34 (82%), Positives = 29/34 (85%)

Query: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           LV  GEAVGVVAAQSIGEPGTQ+TMRTFH  G A
Sbjct: 909 LVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAA 942



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 41/165 (24%)

Query: 247  VFDIEGVDTTKTTTNNIVEIQDVL---GIEAARNAIIYEMDATLGNQGLTVDKRHL-MMV 302
            VF+ E V+  +T  +      D+L   G+E     ++ E+      QG+ ++ +H+  ++
Sbjct: 1198 VFEGEHVEKGETVVDGEPSPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAII 1257

Query: 303  ADLMCTDGVVKPIGRHGIGGEKA------------------------------------- 325
              ++    +V+P   H + GE+                                      
Sbjct: 1258 RQMLRKVEIVEPGESHYLRGEQVERVRINGENERALAKGERPAEYQSVLLGITKASLATE 1317

Query: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            S ++ A+F+ET + L  A++RG  D L G+ EN+IVG+ I  GTG
Sbjct: 1318 SFISAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTG 1362



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 30/203 (14%)

Query: 59   AVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDAR--KEPSTPTMTIYL 116
            A  +V+ Q+  E G    +           ++T GLPR+ ++ +AR  KEP+       +
Sbjct: 1104 AGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLPRVADLFEARKPKEPAILAERSGI 1163

Query: 117  NDEFKGNREKAATVAKNIESTNVESVSEDISVDLVNECITIILNNQQLESRGLTVPD--- 173
                K  + K   + K+++    E        +L+ +   +I+   +   +G TV D   
Sbjct: 1164 ISFGKDTKGKQRLIIKDVDGNEHE--------ELIPKWRQVIVFEGEHVEKGETVVDGEP 1215

Query: 174  ---------VIDAIKSKMKLKIEDHENVLNLKIKTPSLKA-LRKRLPKVRAI------HL 217
                      ++ + + +  +I+D   +  +KI    ++A +R+ L KV  +      +L
Sbjct: 1216 SPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIRQMLRKVEIVEPGESHYL 1275

Query: 218  KGVQNIKRVIIRKEVDEYILYSE 240
            +G Q ++RV I  E +  +   E
Sbjct: 1276 RGEQ-VERVRINGENERALAKGE 1297