Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1394 a.a., DNA-directed RNA polymerase subunit beta' from Xanthobacter sp. DMC5

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 28/37 (75%), Positives = 30/37 (81%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAEL 88
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A L
Sbjct: 904 TPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATL 940



 Score = 43.9 bits (102), Expect = 3e-08
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 30/204 (14%)

Query: 188  DHENVLNLKIK-TPSLKALRKRLPKVRAIHLKGVQNIKR-------------VIIRKEVD 233
            D++N   L I+ T     +   +PK + IHL+    +++             ++  K V+
Sbjct: 1161 DYKNKRRLSIEPTDGGDPVEYLIPKGKHIHLQDGDVVEKGDFIVDGNPAPHDILAIKGVE 1220

Query: 234  EYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLT 293
            E   +   + I+EV+ ++GV         IV           +   I +   T       
Sbjct: 1221 ELAAFLV-NEIQEVYRLQGVHINDKHIEVIVR-------NMLQKVEIDDSGETDFLDNEQ 1272

Query: 294  VDKRHLMMVADLMCTDGVVKPIGRHGI--GGEKASVLAR-----AAFEETVKHLYSASMR 346
            VD+   +   +    +G  KP   H +  G  KAS+  R     A+F+ET + L  A++ 
Sbjct: 1273 VDRLEFLEANEKAAEEGK-KPATGHPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVN 1331

Query: 347  GYVDELGGVVENIIVGKPISMGTG 370
            G +D L G+ EN+IVG+ I  GTG
Sbjct: 1332 GKIDPLEGLKENVIVGRLIPAGTG 1355