Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 23/175 (13%)

Query: 53   LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGV-----------AELNVTLGLPRMIEIV 101
            L+  GEAVGV+AAQSIGEPGTQ+TMRTFH  G            A+ N ++G    +  V
Sbjct: 907  LINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIGFNATMRYV 966

Query: 102  DARKEP---STPTMTIYLNDEFKGNREK------AATVAKNIESTNVESVSEDISVDLVN 152
               K      + +  I ++DE    RE+      A    K  +      V  +    L  
Sbjct: 967  TNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLANWD-PLTR 1025

Query: 153  ECITIILNNQQLES--RGLTVPDVIDAIKSKMKLKIEDHENVLNLKIKTPSLKAL 205
              IT      Q E+   GLTV   +D +     L + D +     K+  P +K +
Sbjct: 1026 PIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI 1080



 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 17/156 (10%)

Query: 221  QNIKRVIIRKEVDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAII 280
            Q+I R++  +E+  YI+      +++V+ ++GV   K    +I    +V+  +  R  ++
Sbjct: 1216 QDILRLLGSEELARYIV----DEVQDVYRLQGV---KINDKHI----EVIVRQMLRRVVV 1264

Query: 281  YEMDATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGG-EKASV-----LARAAFE 334
              +  T    G  V++  ++   D +  +G +     + + G  KAS+     ++ A+F+
Sbjct: 1265 DNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSFISAASFQ 1324

Query: 335  ETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            ET + L  A++ G  DEL G+ EN+IVG+ I  GTG
Sbjct: 1325 ETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTG 1360