Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1418 a.a., DNA-directed RNA polymerase beta from Sphingobium sp. HT1-2

 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 52  TLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIE-IVDARKEPS 108
           T V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A  N T  L  + +  ++ R  P+
Sbjct: 903 TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEALSDGTIELRDMPT 960



 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 43/168 (25%)

Query: 246  EVFDIEGVDTTKTTTNNIV------EIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHL 299
            +V D++  D  K   N I       +I +VLGIE     ++ E+      QG+ ++ +H+
Sbjct: 1181 KVIDVQEGDYVKRGDNLIGGSPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHI 1240

Query: 300  MMVADLMCTD-------------------------------GVVKPIGRHGIGG------ 322
              +   M                                  G     G+  + G      
Sbjct: 1241 ETIVRQMLQKVEIIESGDTTLLVGEQVDREEMDEINSKLQPGFAPAAGKPVLLGITKASL 1300

Query: 323  EKASVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            +  S ++ A+F+ET + L  A+++G  D L G+ EN+IVG+ I  GTG
Sbjct: 1301 QTRSFISAASFQETTRVLTEAAVQGKKDTLVGLKENVIVGRLIPAGTG 1348