Pairwise Alignments

Query, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis S2

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas putida KT2440

 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 26/33 (78%), Positives = 28/33 (84%)

Query: 54  VEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86
           V  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 909 VNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA 941



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370
            S ++ A+F+ET + L  A++ G  D L G+ EN++VG+ I  GTG
Sbjct: 1318 SFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTG 1362